Concepedia

Multi-omics analysis reveals specific modifications associated with reduced chilling injury in bell pepper fruit by methyl jamonate

Anzhen Fu, Yanyan Zheng, Yunhao Lv, Christopher B. Watkins, Chunmei Bai, Lili Ma, Shuzhi Yuan, Shufang Zheng, Li-e JIA, Lipu Gao,

Postharvest Biology and Technology · 2021 · 57 citations · 68 references

DOI

Concepts

References

68

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love, Wolfgang Huber, Simon Anders · Genome biology · 2014 · 100.5K citations · Full text

, , +15

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

Guangchuang Yu, Li-Gen Wang, Yanyan Han et al. · OMICS A Journal of Integrative Biology · 2012 · 38.3K citations

, , +13

HISAT: a fast spliced aligner with low memory requirements

Daehwan Kim, Ben Langmead, Steven L. Salzberg · Nature Methods · 2015 · 26.1K citations · Full text

, , +3

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Cole Trapnell, Brian A. Williams, Geo Pertea et al. · Nature Biotechnology · 2010 · 16.5K citations

, , +16

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

Mihaela Pertea, Daehwan Kim, Geo Pertea et al. · Nature Protocols · 2016 · 7.6K citations

, , +10