Concepedia

Short-read Assembly

Short-Read Assembly is a genome assembly methodology that reconstructs contiguous genomic sequences from large numbers of high-throughput sequencing reads of limited length (typically up to a few hundred base pairs), using algorithms specifically designed for the characteristics and constraints of short-read data.

603

Publications

136.5K

Citations

3.3K

Authors

1K

Institutions

Publications per year

2017–2026

318

Parents

Children

Publications

603

Minimap2: pairwise alignment for nucleotide sequences

Heng Li · Bioinformatics · 2018 · 16.8K citations · Full text

, , +17

FLASH: fast length adjustment of short reads to improve genome assemblies

Tanja Magoč, Steven L. Salzberg · Bioinformatics · 2011 · 15.7K citations · Full text

, , +15

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

Daniel R. Zerbino, Ewan Birney · Genome Research · 2008 · 9.7K citations · Full text

, , +14

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

Ryan R. Wick, Louise M. Judd, Claire L. Gorrie et al. · PLoS Computational Biology · 2017 · 8.8K citations · Full text

, , +15

SOAPdenovo2: an empirically improved memory-efficient short-read <i>de novo</i> assembler

Ruibang Luo, Binghang Liu, Yinlong Xie et al. · GigaScience · 2012 · 5.6K citations · Full text

, , +17

1–5 of 603

Authors

3.3K

  1. SK
    Sergey Koren

    National Human Genome Research Institute, United States

    18 publications · 3.9K citations

    14

    h-index

  2. PA
    Pavel A. Pevzner

    University of California San Diego, United States

    13 publications · 3.9K citations

    13

    h-index

  3. AM
    Adam M. Phillippy

    National Human Genome Research Institute, United States

    15 publications · 3.5K citations

    13

    h-index

  4. TP
    Timothy P. L. Smith

    Roman L. Hruska U.S. Meat Animal Research Center, United States

    12 publications · 2.5K citations

    12

    h-index

  5. RR
    Ryan R. Wick

    The University of Melbourne, Australia

    12 publications · 10.7K citations

    12

    h-index

1–5 of 3.3K

Institutions

1K

  1. The University of Melbourne

    Melbourne, Australia

    20 h-index

    60 publications

    40.4K citations

  2. Johns Hopkins University

    Baltimore, United States

    19 h-index

    71 publications

    56.1K citations

  3. University of Maryland, College Park

    College Park, United States

    19 h-index

    51 publications

    12.5K citations

  4. Stanford University

    Stanford, United States

    16 h-index

    72 publications

    7.3K citations

  5. University of California San Diego

    San Diego, United States

    16 h-index

    44 publications

    11.9K citations

  6. Chinese Academy of Sciences

    Beijing, China

    16 h-index

    66 publications

    16.8K citations

  7. Pacific Biosciences (United States)

    Menlo Park, United States

    16 h-index

    34 publications

    5.2K citations

  8. Wellcome Sanger Institute

    Cambridge, United Kingdom

    15 h-index

    71 publications

    14.1K citations

1–8 of 1K

Venues

  1. Bioinformatics

    68 publications · 43.8K citations

    42

    h-index

  2. PLoS ONE

    37 publications · 2.9K citations

    30

    h-index

  3. GigaScience

    39 publications · 10.5K citations

    30

    h-index

  4. BMC Genomics

    46 publications · 3.4K citations

    28

    h-index

  5. Genome Research

    GR · 27 publications · 28K citations

    26

    h-index

1–5