Concepedia

Mate-pair Read Assembly

Mate-Pair Read Assembly is a genome assembly methodology that leverages paired-end sequencing reads derived from the ends of DNA fragments of larger, known size ranges to scaffold contigs and resolve repetitive genomic regions with enhanced long-range connectivity.

5

Publications

1.2K

Citations

24

Authors

13

Institutions

Publications per year

2017–2026

0

Parents

Publications

5

Aggressive assembly of pyrosequencing reads with mates

Jason Miller, Arthur L. Delcher, Sergey Koren et al. · Bioinformatics · 2008 · 642 citations · Full text

, , +16

Short read fragment assembly of bacterial genomes

Mark Chaisson, Pavel A. Pevzner · Genome Research · 2007 · 446 citations · Full text

, , +17

Assembly scaffolding with PE-contaminated mate-pair libraries

Kristoffer Sahlin, Rayan Chikhi, Lars Arvestad · Bioinformatics · 2016 · 50 citations · Full text

, , +9

A Method to Simultaneously Construct up to 12 Differently Sized Illumina Nextera Long Mate Pair Libraries with Reduced DNA Input, Time, and Cost

Darren Heavens, Gonzalo Garcia Accinelli, Bernardo Clavijo et al. · BioTechniques · 2015 · 20 citations · Full text

, , +17

Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly

Son Pham, Dmitry Antipov, Alexander Sirotkin et al. · Journal of Computational Biology · 2012 · 18 citations · Full text

, , +17

1–5 of 5

Authors

24

  1. PA
    Pavel A. Pevzner

    University of California San Diego, United States

    2 publications · 464 citations

    2

    h-index

  2. MD
    Matthew D. Clark

    Earlham Institute, United Kingdom

    1 publications · 20 citations

    1

    h-index

  3. GG
    Gonzalo Garcia Accinelli

    Earlham Institute, United Kingdom

    1 publications · 20 citations

    1

    h-index

  4. DH
    Darren Heavens

    Earlham Institute, United Kingdom

    1 publications · 20 citations

    1

    h-index

  5. DA
    Dmitry Antipov

    St Petersburg University, Russia

    1 publications · 18 citations

    1

    h-index

1–5 of 24

Institutions

13

  1. University of California San Diego

    San Diego, United States

    2 h-index

    5 publications

    946 citations

  2. University of South Carolina

    Columbia, United States

    1 h-index

    1 publications

    18 citations

  3. KTH Royal Institute of Technology

    Stockholm, Sweden

    1 h-index

    1 publications

    50 citations

  4. Science for Life Laboratory

    Stockholm, Sweden

    1 h-index

    2 publications

    100 citations

  5. University of California System

    Oakland, United States

    1 h-index

    3 publications

    54 citations

  6. University of Maryland, College Park

    College Park, United States

    1 h-index

    10 publications

    6.4K citations

  7. Swedish e-Science Research Centre

    Stockholm, Sweden

    1 h-index

    1 publications

    50 citations

  8. J. Craig Venter Institute

    La Jolla, United States

    1 h-index

    10 publications

    6.4K citations

1–8 of 13

Venues

  1. Bioinformatics

    2 publications · 692 citations

    2

    h-index

  2. BioTechniques

    1 publications · 20 citations

    1

    h-index

  3. Genome Research

    GR · 1 publications · 446 citations

    1

    h-index

  4. Journal of Computational Biology

    1 publications · 18 citations

    1

    h-index

1–4