Concepedia

Genome Assembly

Genome assembly is a bioinformatics process that reconstructs complete genomic sequences from short, overlapping DNA reads.

5.1K

Publications

861.6K

Citations

27.6K

Authors

4.3K

Institutions

Publications per year

2017–2026

2.7K

Parents

Children

Publications

5.1K

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

Anton Bankevich, Sergey Nurk, Dmitry Antipov et al. · Journal of Computational Biology · 2012 · 27.2K citations

, , +17

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Manfred Grabherr, Brian J. Haas, Moran Yassour et al. · Nature Biotechnology · 2011 · 22.6K citations · Full text

, , +13

Prokka: rapid prokaryotic genome annotation

Torsten Seemann · Bioinformatics · 2014 · 19.6K citations

, , +13

Minimap2: pairwise alignment for nucleotide sequences

Heng Li · Bioinformatics · 2018 · 16.8K citations · Full text

, , +17

FLASH: fast length adjustment of short reads to improve genome assemblies

Tanja Magoč, Steven L. Salzberg · Bioinformatics · 2011 · 15.7K citations · Full text

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1–5 of 5.1K

Authors

27.6K

  1. SK
    Sergey Koren

    National Human Genome Research Institute, United States

    101 publications · 43.3K citations

    65

    h-index

  2. AM
    Adam M. Phillippy

    National Human Genome Research Institute, United States

    98 publications · 45.1K citations

    65

    h-index

  3. EE
    Evan E. Eichler

    University of Washington, United States

    78 publications · 26K citations

    53

    h-index

  4. MC
    Michael C. Schatz

    Johns Hopkins University, United States

    61 publications · 23.3K citations

    47

    h-index

  5. SL
    Steven L. Salzberg

    Johns Hopkins University, United States

    56 publications · 41.8K citations

    46

    h-index

1–5 of 27.6K

Institutions

4.3K

  1. Howard Hughes Medical Institute

    Chevy Chase, United States

    98 h-index

    462 publications

    174.9K citations

  2. Wellcome Sanger Institute

    Cambridge, United Kingdom

    83 h-index

    895 publications

    301.9K citations

  3. University of Washington

    Seattle, United States

    78 h-index

    607 publications

    163K citations

  4. Centre National de la Recherche Scientifique

    Paris, France

    75 h-index

    831 publications

    99.5K citations

  5. National Institutes of Health

    Bethesda, United States

    75 h-index

    691 publications

    241.7K citations

  6. University of California, Davis

    Davis, United States

    69 h-index

    458 publications

    92.8K citations

  7. University of California, Santa Cruz

    Santa Cruz, United States

    68 h-index

    785 publications

    357.9K citations

  8. Johns Hopkins University

    Baltimore, United States

    67 h-index

    474 publications

    214.9K citations

1–8 of 4.3K

Venues

  1. Bioinformatics

    312 publications · 156.9K citations

    107

    h-index

  2. Genome Research

    GR · 184 publications · 86.2K citations

    101

    h-index

  3. Genome biology

    117 publications · 37.5K citations

    80

    h-index

  4. Nucleic Acids Research

    177 publications · 45.8K citations

    78

    h-index

  5. BMC Genomics

    246 publications · 19.2K citations

    73

    h-index

1–5

See also

Genome Assembly

Core Methods

Evaluation

Challenges

Applications