Concepedia

Assembly Polishing

Assembly Polishing is a computational refinement process in genome assembly that corrects residual errors in a draft sequence by realigning sequencing reads to improve base accuracy without altering the overall assembly structure.

38

Publications

4.6K

Citations

183

Authors

104

Institutions

Publications per year

2017–2026

33

Variants

Genome Assembly Polishing

Parents

Children

Publications

38

Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes

Kishwar Shafin, Trevor Pesout, Ryan Lorig-Roach et al. · Nature Biotechnology · 2020 · 654 citations · Full text

, , +16

Trycycler: consensus long-read assemblies for bacterial genomes

Ryan R. Wick, Louise M. Judd, Louise Cerdeira et al. · Genome biology · 2021 · 556 citations · Full text

, , +16

Contiguous and accurate <i>de novo</i> assembly of metazoan genomes with modest long read coverage

Mahul Chakraborty, James G. Baldwin-Brown, Anthony D. Long et al. · Nucleic Acids Research · 2016 · 489 citations · Full text

, , +13

The genome polishing tool POLCA makes fast and accurate corrections in genome assemblies

Aleksey V. Zimin, Steven L. Salzberg · PLoS Computational Biology · 2020 · 435 citations · Full text

, , +16

DBG2OLC: Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies

Chengxi Ye, C. Hill, Shigang Wu et al. · Scientific Reports · 2016 · 351 citations · Full text

, , +12

1–5 of 38

Authors

183

  1. SK
    Sergey Koren

    National Human Genome Research Institute, United States

    6 publications · 920 citations

    6

    h-index

  2. KS
    Kishwar Shafin

    University of California, Santa Cruz, United States

    6 publications · 920 citations

    6

    h-index

  3. AM
    Adam M. Phillippy

    National Human Genome Research Institute, United States

    6 publications · 920 citations

    6

    h-index

  4. RR
    Ryan R. Wick

    The University of Melbourne, Australia

    6 publications · 935 citations

    6

    h-index

  5. JM
    Justin M. Zook

    National Institute of Standards and Technology, United States

    5 publications · 851 citations

    5

    h-index

1–5 of 183

Institutions

104

  1. University of California, Santa Cruz

    Santa Cruz, United States

    7 h-index

    45 publications

    13.6K citations

  2. National Human Genome Research Institute

    Bethesda, United States

    6 h-index

    23 publications

    2.5K citations

  3. National Institute of Standards and Technology

    Gaithersburg, United States

    5 h-index

    5 publications

    851 citations

  4. The University of Melbourne

    Melbourne, Australia

    5 h-index

    9 publications

    710 citations

  5. University of Washington

    Seattle, United States

    5 h-index

    11 publications

    2.9K citations

  6. Johns Hopkins University

    Baltimore, United States

    5 h-index

    10 publications

    1.2K citations

  7. Centre National de la Recherche Scientifique

    Paris, France

    4 h-index

    13 publications

    1.1K citations

  8. University of California San Diego

    San Diego, United States

    4 h-index

    5 publications

    297 citations

1–8 of 104

Venues

  1. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 8 publications · 301 citations

    9

    h-index

  2. Bioinformatics

    5 publications · 306 citations

    5

    h-index

  3. Scientific Reports

    3 publications · 449 citations

    3

    h-index

  4. Nature Methods

    2 publications · 192 citations

    2

    h-index

  5. Molecular Ecology Resources

    2 publications · 124 citations

    2

    h-index

1–5