Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

Laurent Excoffier, Heidi E. L. Lischer

Molecular Ecology Resources

EngineeringGeneticsNew SeriesGenomicsHigh Throughput Sequencing +22

<scp>genepop</scp>’007: a complete re‐implementation of the<scp>genepop</scp>software for Windows and Linux

François Rousset

Molecular Ecology Resources

PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies

Dong Zhang, Fangluan Gao, Ivan Jakovlić, +4

Molecular Ecology Resources

GeneticsGenomicsBioinformatics DatabasePhylogenetic AnalysisPhylogenetics +18

<scp>Morpho</scp>J: an integrated software package for geometric morphometrics

Christian Peter Klingenberg

Molecular Ecology Resources

Inferring weak population structure with the assistance of sample group information

Melissa J. Hubisz, Daniel Falush, Matthew Stephens, +1

Molecular Ecology Resources

GeneticsPopulation DynamicSampling TechniqueSample Group InformationGenetic Analysis +23

<scp>Clumpak</scp>: a program for identifying clustering modes and packaging population structure inferences across <i>K</i>

Naama M. Kopelman, Jonathan Mayzel, Mattias Jakobsson, +2

Molecular Ecology Resources

Cluster ComputingMarkov Clustering AlgorithmGenetic DiversityData ScienceMolecular Ecology +18

<scp>NeEstimator</scp> v2: re‐implementation of software for the estimation of contemporary effective population size (<i>N</i>_<i>e</i>) from genetic data

Robin S. Waples, David Peel, G. M. Macbeth, +2

Molecular Ecology Resources

Population ScienceGeneticsGenetic EpidemiologyAvailable SoftwareGenomics +20

MitoFinder: Efficient automated large‐scale extraction of mitogenomic data in target enrichment phylogenomics

Rémi Allio, Alex Schomaker-Bastos, Jonathan Romiguier, +3

Molecular Ecology Resources

COLONY: a program for parentage and sibship inference from multilocus genotype data

Owen R. Jones, Jinliang Wang

Molecular Ecology Resources

Haplotype DeterminationGenotype-phenotype AssociationMolecular EcologyMolecular MarkersMedicine +13

ASAP: assemble species by automatic partitioning

Nicolas Puillandre, Sophie Brouillet, Guillaume Achaz

Molecular Ecology Resources