Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks

Paul Shannon, Andrew Markiel, Owen Ozier, +6

Genome Research

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

Aaron McKenna, Matthew G. Hanna, Eric Banks, +8

Genome Research

WebLogo: A Sequence Logo Generator: Figure 1

Gavin E. Crooks, Gary C. Hon, John‐Marc Chandonia, +1

Genome Research

Interactive VisualizationEngineeringSequence LogosGeneticsVisualization (Graphics) +11

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

Donovan H. Parks, Michael Imelfort, Connor T. Skennerton, +2

Genome Research

Circos: An information aesthetic for comparative genomics

Martin Krzywinski, Jacqueline E. Schein, İnanç Birol, +5

Genome Research

EngineeringGeneticsGenomicsBioinformatics DatabaseMolecular Ecology +17

The Human Genome Browser at UCSC

W. James Kent, Charles W. Sugnet, Terrence S. Furey, +4

Genome Research

Fast model-based estimation of ancestry in unrelated individuals

David H. Alexander, John Novembre, Kenneth Lange

Genome Research

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

Daniel R. Zerbino, Ewan Birney

Genome Research

Most mammalian mRNAs are conserved targets of microRNAs

Robin C. Friedman, Kyle Kai‐How Farh, Christopher B. Burge, +1

Genome Research

<tt>BLAT</tt>—The <tt>BLAST</tt>-Like Alignment Tool

W. James Kent

Genome Research

BiologyLong-read SequencingPhylogeneticsComparative GenomicsGenetics +12