John‐Marc Chandonia

Author

John‐Marc Chandonia

Lawrence Berkeley National Laboratory ORCID

Also Known As

Chandonia, John-Marc, Chandonia, John-Marc; Andreeva, Antonina; Howorth, Dave; Chandonia, John-Marc; Brenner, Steven E.; Hubbard, Tim J.P.; Chothia, Cyrus; Murzin, Alexey G., J.-M. Chandonia, John-Marc Chandonia, John‐Marc Chandonia

Publications

18.6K

Citations

H-Index

Concepts

All Affiliations

Lawrence Berkeley National Laboratory University of California, Berkeley University of Tennessee at Knoxville Oak Ridge National Laboratory University of California, San Francisco

About

John‐Marc Chandonia is an author at Lawrence Berkeley National Laboratory specializing in medicine, bioinformatics, and molecular biology.

Top Concepts

#	Concept	H-Index	Publications	Citations
1	Medicine	12	12	14.8K
2	Natural Sciences	8	8	2K
3	Engineering	5	5	13.1K
4	Biochemistry	2	2	119
5	Humanities	1	1	532

John‐Marc Chandonia

Publications

18.1K

Citations

H-Index

Page 1

	Year	Citations
WebLogo: A Sequence Logo Generator: Figure 1 Gavin E. Crooks, Gary C. Hon, John‐Marc Chandonia, Genome Research Interactive VisualizationEngineeringSequence LogosGeneticsVisualization (Graphics)	2004	12.7K
KBase: The United States Department of Energy Systems Biology Knowledgebase Adam P. Arkin, Robert W. Cottingham, Christopher S. Henry, Nature Biotechnology	2018	1.6K
The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families Shibu Yooseph, Granger Sutton, Douglas B. Rusch, PLoS Biology Structural BioinformaticsMolecular BiologyShotgun SequencingGenomicsSequence Alignment	2007	926
SCOPe: Structural Classification of Proteins—extended, integrating SCOP and ASTRAL data and classification of new structures Naomi K. Fox, Steven E. Brenner, John‐Marc Chandonia Nucleic Acids Research	2013	806
The ASTRAL Compendium in 2004 John‐Marc Chandonia Nucleic Acids Research Structural BioinformaticsMolecular BiologyRepresentative SubsetsBioinformatics DatabaseProteomics	2003	532
SCOPe: improvements to the structural classification of proteins – extended database to facilitate variant interpretation and machine learning John‐Marc Chandonia, Lindsey Guan, Shiangyi Lin, Nucleic Acids Research Scope DomainsEngineeringMachine LearningStructural BioinformaticsBiomolecular Structure Prediction	2021	193
SCOPe: classification of large macromolecular structures in the structural classification of proteins—extended database John‐Marc Chandonia, Naomi K. Fox, Steven E. Brenner Nucleic Acids Research	2018	174
ASTRAL compendium enhancements John‐Marc Chandonia Nucleic Acids Research Structural BioinformaticsGeneticsMolecular BiologySequence AlignmentBioinformatics Database	2002	137
New methods for accurate prediction of protein secondary structure John‐Marc Chandonia, Martin Karplus Proteins Structure Function and Bioinformatics Structural BioinformaticsBiomolecular Structure PredictionGeneticsMolecular BiologyStructural Class Prediction	1999	123
Neural networks for secondary structure and structural class predictions John‐Marc Chandonia, Martin Karplus Protein Science EngineeringMachine LearningStructural BioinformaticsBiomolecular Structure PredictionStructural Pattern Recognition	1995	122

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