SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

Anton Bankevich, Sergey Nurk, Dmitry Antipov, +13

Journal of Computational Biology

A Greedy Algorithm for Aligning DNA Sequences

Zheng Zhang, Scott Schwartz, Lukas Wagner, +1

Journal of Computational Biology

GeneticsMolecular BiologyAligning Dna SequencesDna SequencesGenomics +16

Using Bayesian Networks to Analyze Expression Data

Nir Friedman, Michal Linial, Iftach Nachman, +1

Journal of Computational Biology

Bayesian StatisticEngineeringGeneticsData ScienceData Mining +19

Maximum Entropy Modeling of Short Sequence Motifs with Applications to RNA Splicing Signals

G Yeo, Christopher B. Burge

Journal of Computational Biology

Improved Splice Site Detection in Genie

Martin G. Reese, Frank H. Eeckman, David Kulp, +1

Journal of Computational Biology

EngineeringNearest Splice SiteGeneticsMolecular BiologyDetection Technique +17

Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products

Sergey Nurk, Anton Bankevich, Dmitry Antipov, +15

Journal of Computational Biology

cutPrimers: A New Tool for Accurate Cutting of Primers from Reads of Targeted Next Generation Sequencing

Andrey Kechin, Uljana A. Boyarskikh, Alexander Kel

Journal of Computational Biology

New ToolGeneticsMolecular BiologyGenomicsHigh Throughput Sequencing +18

Analysis of Variance for Gene Expression Microarray Data

Kathleen F. Kerr, Mitchell Martin, Gary A. Churchill

Journal of Computational Biology

Functional GenomicsEngineeringComputational GenomicsComputational BiologyGene Expression +10

Comprehensive Algorithm for Quantitative Real-Time Polymerase Chain Reaction

Sheng Zhao, Russell D. Fernald

Journal of Computational Biology

EngineeringMolecular BiologyTranscriptomics TechnologyReal-time Polymerase Chain ReactionGene Expression Profiling +19

Clustering Gene Expression Patterns

Amir Ben‐Dor, Ron Shamir, Zohar Yakhini

Journal of Computational Biology