Full-length transcriptome assembly from RNA-Seq data without a reference genome

Manfred Grabherr, Brian J. Haas, Moran Yassour, +17

Nature Biotechnology

Long-read SequencingFunctional GenomicsNatural SciencesGeneticsSequence Analysis +10

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

Brian J. Haas, Alexie Papanicolaou, Moran Yassour, +20

Nature Protocols

Functional GenomicsMedicineGeneticsNatural SciencesSequence Analysis +12

The Treatment-Naive Microbiome in New-Onset Crohn’s Disease

Dirk Gevers, Subra Kugathasan, Lee A. Denson, +29

Cell Host & Microbe

Chronic Inflammatory DiseasesDysbiosisMucosal ImmunologyGut MicrobiologyGastroenterology +5

Variation in Microbiome LPS Immunogenicity Contributes to Autoimmunity in Humans

Tommi Vatanen, Aleksandar D. Kostic, Eva d’Hennezel, +21

Cell

DysbiosisAutoimmune DiseaseMicrobial PathogensAllergyMucosal Immunology +8

Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome

Pamela Ferretti, Edoardo Pasolli, Adrian Tett, +42

Cell Host & Microbe

Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability

Moran Yassour, Tommi Vatanen, Heli Siljander, +9

Science Translational Medicine

DysbiosisAntibiotic ResistanceAntibiotic Resistance GenesGut MicrobiologyIntestinal Microbiota +14

Comprehensive comparative analysis of strand-specific RNA sequencing methods

Joshua Z. Levin, Moran Yassour, Xian Adiconis, +5

Nature Methods

Comprehensive Comparative AnalysisSequencingFunctional GenomicsGeneticsSequence Analysis +6

A novel Ruminococcus gnavus clade enriched in inflammatory bowel disease patients

A. Brantley Hall, Moran Yassour, Jenny Sauk, +19

Genome Medicine

High-Resolution View of the Yeast Meiotic Program Revealed by Ribosome Profiling

Gloria A. Brar, Moran Yassour, Nir Friedman, +3

Science

High-resolution ViewGeneticsMolecular BiologyMolecular GeneticsMessenger Rna +22

Comparative Functional Genomics of the Fission Yeasts

Zehua Chen, Moran Yassour, Dawn Thompson, +56

Science

GeneticsMolecular GeneticsGenomicsComparative Functional GenomicsGene Structure +15