phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

Paul J. McMurdie, Susan Holmes

PLoS ONE

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

Morgan N. Price, Paramvir Dehal, Adam P. Arkin

PLoS ONE

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

Bruce J. Walker, Thomas Abeel, Terrance Shea, +8

PLoS ONE

EngineeringGeneticsDiploid GenomesContiguous GenomesMolecular Biology +18

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

Fran Supek, Matko Bošnjak, Nives Škunca, +1

PLoS ONE

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

Robert J. Elshire, Jeffrey C. Glaubitz, Qi Sun, +4

PLoS ONE

Comparative GenomicsGeneticsGenomicsHigh Throughput SequencingGenetic Diversity +20

Leishmaniasis Worldwide and Global Estimates of Its Incidence

Jorge Alvar, Iván Darío Vélez, Caryn Bern, +5

PLoS ONE

Parasitic DiseaseLeishmaniasis WorldwideParasitic ProtozoaAfrican TrypanosomiasisGlobal Health +11

Plastic Pollution in the World's Oceans: More than 5 Trillion Plastic Pieces Weighing over 250,000 Tons Afloat at Sea

Marcus Eriksen, Laurent Lebreton, Henry S. Carson, +6

PLoS ONE

SoilGrids250m: Global gridded soil information based on machine learning

Tomislav Hengl, Jorge Mendes de Jesus, G.B.M. Heuvelink, +16

PLoS ONE

On Pixel-Wise Explanations for Non-Linear Classifier Decisions by Layer-Wise Relevance Propagation

Sebastian Bach, Alexander Binder, Grégoire Montavon, +3

PLoS ONE

Artificial IntelligenceConvolutional Neural NetworkEngineeringMachine LearningClassification Decision +21

BrainNet Viewer: A Network Visualization Tool for Human Brain Connectomics

Mingrui Xia, Jinhui Wang, Yong He

PLoS ONE

Network AnalysisBrain MappingBrainnet ViewerSocial SciencesNetwork Visualization +14