Concepedia

Variant-aware Assembly

Variant-Aware Assembly is a computational assembly method that incorporates known genetic variants into the reference-guided reconstruction of genomes to improve the accuracy of haplotype-resolved sequence assembly in polymorphic regions.

7

Publications

10.4K

Citations

46

Authors

20

Institutions

Publications per year

2017–2026

5

Parents

Publications

7

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

Bruce J. Walker, Thomas Abeel, Terrance Shea et al. · PLoS ONE · 2014 · 10.2K citations · Full text

, , +17

Alignment of 1000 Genomes Project reads to reference assembly GRCh38

Xiangqun Zheng-Bradley, Ian Streeter, Susan Fairley et al. · GigaScience · 2017 · 106 citations · Full text

, , +17

Sequence variation aware genome references and read mapping with the variation graph toolkit

Erik Garrison, Jouni Sirén, Adam M. Novak et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2017 · 21 citations · Full text

, , +17

DiscoSnp-RAD: de novo detection of small variants for RAD-Seq population genomics

Jérémy Gauthier, Charlotte Mouden, Tomasz Suchan et al. · PeerJ · 2020 · 18 citations · Full text

, , +17

Quinoa genome assembly employing genomic variation for guided scaffolding

Alexandrina Bodrug‐Schepers, Nancy Stralis‐Pavese, Hermann Buerstmayr et al. · Theoretical and Applied Genetics · 2021 · 16 citations · Full text

, , +14

1–5 of 7

Authors

46

  1. ER
    Elizabeth R. Bolton

    Medical College of Wisconsin, United States

    1 publications · 12 citations

    1

    h-index

  2. XZ
    Xiangqun Zheng-Bradley

    European Bioinformatics Institute, United Kingdom

    1 publications · 106 citations

    1

    h-index

  3. JG
    Jérémy Gauthier

    Centre National de la Recherche Scientifique, France

    1 publications · 18 citations

    1

    h-index

  4. DR
    David Richardson

    Wellcome Sanger Institute, United Kingdom

    1 publications · 106 citations

    1

    h-index

  5. SH
    Sheridan Houghten

    Brock University, Canada

    1 publications · 12 citations

    1

    h-index

1–5 of 46

Institutions

20

  1. European Bioinformatics Institute

    Cambridge, United Kingdom

    1 h-index

    6 publications

    636 citations

  2. University of Guelph

    Guelph, Canada

    1 h-index

    1 publications

    12 citations

  3. VIB-UGent Center for Plant Systems Biology

    Ghent, Belgium

    1 h-index

    1 publications

    10.2K citations

  4. Natural History Museum of Geneva

    Geneva, Switzerland

    1 h-index

    1 publications

    18 citations

  5. University of Cambridge

    Cambridge, United Kingdom

    1 h-index

    1 publications

    21 citations

  6. Broad Institute

    Cambridge, United States

    1 h-index

    11 publications

    112.4K citations

  7. Polish Academy of Sciences

    Warsaw, Poland

    1 h-index

    1 publications

    18 citations

  8. Władysław Szafer Institute of Botany

    Krakow, Poland

    1 h-index

    1 publications

    18 citations

1–8 of 20

Venues

  1. Biosystems

    1 publications · 12 citations

    1

    h-index

  2. PeerJ

    1 publications · 18 citations

    1

    h-index

  3. GigaScience

    1 publications · 106 citations

    1

    h-index

  4. PLoS ONE

    1 publications · 10.2K citations

    1

    h-index

  5. Methods in molecular biology

    Book series · 1 publications · 12 citations

    1

    h-index

1–5