Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

Bruce J. Walker, Thomas Abeel, Terrance Shea, +8

PLoS ONE

EngineeringGeneticsDiploid GenomesContiguous GenomesMolecular Biology +18

Robust biomarker identification for cancer diagnosis with ensemble feature selection methods

Thomas Abeel, Thibault Helleputte, Yves Van de Peer, +2

Bioinformatics

The Mycobacterium tuberculosis regulatory network and hypoxia

James E. Galagan, K Minch, Matthew Peterson, +42

Nature

Pulmonary TuberculosisTuberculosis PreventionHypoxia (Medicine)TuberculosisMicrobiology +4

Evolution of Extensively Drug-Resistant Tuberculosis over Four Decades: Whole Genome Sequencing and Dating Analysis of Mycobacterium tuberculosis Isolates from KwaZulu-Natal

Keira A. Cohen, Thomas Abeel, Abigail L. Manson, +29

PLoS Medicine

Genomic analysis of globally diverse Mycobacterium tuberculosis strains provides insights into the emergence and spread of multidrug resistance

Abigail L. Manson, Keira A. Cohen, Thomas Abeel, +43

Nature Genetics

Medical MicrobiologyPulmonary TuberculosisAntimicrobial Resistance GeneHealth SciencesGenomic Analysis +9

ANGUSTIFOLIA3 Binds to SWI/SNF Chromatin Remodeling Complexes to Regulate Transcription during <i>Arabidopsis</i> Leaf Development

Liesbeth Vercruyssen, Aurine Verkest, Nathalie González, +21

The Plant Cell

Generic eukaryotic core promoter prediction using structural features of DNA

Thomas Abeel, Yvan Saeys, Éric Bonnet, +2

Genome Research

GeneticsMolecular BiologyTranscriptomics TechnologyGenomicsGene Recognition +18

GenomeView: a next-generation genome browser

Thomas Abeel, Thomas Van Parys, Yvan Saeys, +2

Nucleic Acids Research

EngineeringGeneticsStand-alone Genome BrowserGenomicsHigh Throughput Sequencing +16

Genomic and functional analyses of Mycobacterium tuberculosis strains implicate ald in D-cycloserine resistance

Christopher A. Desjardins, Keira A. Cohen, Vanisha Munsamy, +14

Nature Genetics

Antimicrobial Resistance GeneHealth SciencesMolecular BiologyTuberculosisMycobacterium Tuberculosis Strains +8

Nanopore sequencing enables near-complete de novo assembly of Saccharomyces cerevisiae reference strain CEN.PK113-7D

Alex Salazar, Arthur R. Gorter de Vries, Marcel van den Broek, +6

FEMS Yeast Research

EngineeringGeneticsMolecular BiologyGenomicsGene Annotations +16