Concepedia

Assembly Ambiguity Resolution

Assembly Ambiguity Resolution is a computational method within short-read assembly that identifies and resolves conflicting alignments or branching paths in a de Bruijn graph by leveraging read-pair, read-depth, or sequence-context information to reconstruct the most biologically plausible contiguous sequences.

15

Publications

1.2K

Citations

59

Authors

32

Institutions

Publications per year

2017–2026

3

Parents

Publications

15

Space-efficient and exact de Bruijn graph representation based on a Bloom filter

Rayan Chikhi, Guillaume Rizk · Algorithms for Molecular Biology · 2013 · 381 citations · Full text

, , +16

Viewing and Editing Assembled Sequences Using Consed

David Gordon · Current Protocols in Bioinformatics · 2003 · 227 citations

, , +15

Fast characterization of segmental duplications in genome assemblies

Ibrahim Numanagić, Alim Şükrücan Gökkaya, Lillian Zhang et al. · Bioinformatics · 2018 · 107 citations · Full text

, , +17

HINGE: long-read assembly achieves optimal repeat resolution

Govinda M. Kamath, Ilan Shomorony, Fei Xia et al. · Genome Research · 2017 · 104 citations · Full text

, , +17

Paired de Bruijn Graphs: A Novel Approach for Incorporating Mate Pair Information into Genome Assemblers

Paul Medvedev, Son Pham, Mark Chaisson et al. · Journal of Computational Biology · 2011 · 81 citations · Full text

, , +15

1–5 of 15

Authors

59

  1. TA
    Thomas A. Courtade

    University of California, Berkeley, United States

    2 publications · 114 citations

    2

    h-index

  2. IS
    Ilan Shomorony

    University of Illinois Urbana-Champaign, United States

    2 publications · 114 citations

    2

    h-index

  3. DT
    David Tse

    University of California, Berkeley, United States

    2 publications · 114 citations

    2

    h-index

  4. GM
    Govinda M. Kamath

    Stanford University, United States

    2 publications · 114 citations

    2

    h-index

  5. FX
    Fei Xia

    University of Washington, United States

    2 publications · 114 citations

    2

    h-index

1–5 of 59

Institutions

32

  1. Stanford University

    Stanford, United States

    2 h-index

    6 publications

    342 citations

  2. Institut de Recherche en Informatique et Systèmes Aléatoires

    Rennes, France

    2 h-index

    2 publications

    401 citations

  3. University of California, Berkeley

    Berkeley, United States

    2 h-index

    6 publications

    342 citations

  4. Harvard University

    Cambridge, United States

    1 h-index

    1 publications

    31 citations

  5. Human Genome Sciences (United States)

    Rockville, United States

    1 h-index

    1 publications

    31 citations

  6. École Normale Supérieure Paris-Saclay

    Gif-sur-Yvette, France

    1 h-index

    1 publications

    381 citations

  7. The University of Queensland

    Brisbane, Australia

    1 h-index

    5 publications

    95 citations

  8. New York University

    New York, United States

    1 h-index

    2 publications

    60 citations

1–8 of 32

Venues

  1. Bioinformatics

    3 publications · 149 citations

    3

    h-index

  2. Algorithms for Molecular Biology

    AMB · 2 publications · 401 citations

    2

    h-index

  3. Current Protocols in Bioinformatics

    1 publications · 227 citations

    1

    h-index

  4. PubMed

    Repository · 1 publications · 31 citations

    1

    h-index

  5. Genome Research

    GR · 1 publications · 104 citations

    1

    h-index

1–5