Algorithms for Molecular Biology

ViennaRNA Package 2.0

Ronny Lorenz, Christian Höner zu Siederdissen, Hakim Tafer et al. · 2011 · 5.1K citations · Full text

Jane: a new tool for the cophylogeny reconstruction problem

Chris Conow, Daniel C. Fielder, Yaniv Ovadia et al. · 2010 · 405 citations · Full text

Space-efficient and exact de Bruijn graph representation based on a Bloom filter

Rayan Chikhi, Guillaume Rizk · 2013 · 373 citations · Full text

Partition function and base pairing probabilities of RNA heterodimers

Hakim Tafer, Ulrike Mückstein, Christoph Flamm et al. · 2006 · 311 citations · Full text

Identification of alternative topological domains in chromatin

Darya Filippova, Rob Patro, Geet Duggal et al. · 2014 · 240 citations · Full text