Rob Patro

Salmon provides fast and bias-aware quantification of transcript expression

Rob Patro, Geet Duggal, Michael I. Love et al. · Nature Methods · 2017 · 12.7K citations · Full text

TransRate: reference-free quality assessment of de novo transcriptome assemblies

Richard Smith-Unna, Chris Boursnell, Rob Patro et al. · Genome Research · 2016 · 875 citations · Full text

Long-read Sequencing, Reference-free Quality Assessment, Functional Genomics +13

Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms

Rob Patro, Stephen M. Mount, Carl Kingsford · Nature Biotechnology · 2014 · 638 citations · Full text

Biology, Long-read Sequencing, Functional Genomics +13

Tximeta: Reference sequence checksums for provenance identification in RNA-seq

Michael I. Love, Charlotte Soneson, Peter F. Hickey et al. · PLoS Computational Biology · 2020 · 350 citations · Full text

Engineering, Correct Annotation Metadata, Genetics +19

Alevin efficiently estimates accurate gene abundances from dscRNA-seq data

Avi Srivastava, Laraib Malik, Tom Smith et al. · Genome biology · 2019 · 295 citations · Full text