Carl Kingsford

Salmon provides fast and bias-aware quantification of transcript expression

Rob Patro, Geet Duggal, Michael I. Love et al. · Nature Methods · 2017 · 12.7K citations · Full text

A fast, lock-free approach for efficient parallel counting of occurrences of <i>k</i> -mers

Guillaume Marçais, Carl Kingsford · Bioinformatics · 2011 · 4.8K citations · Full text

Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms

Rob Patro, Stephen M. Mount, Carl Kingsford · Nature Biotechnology · 2014 · 638 citations · Full text

Biology, Long-read Sequencing, Functional Genomics +13

The power of protein interaction networks for associating genes with diseases

Saket Navlakha, Carl Kingsford · Bioinformatics · 2010 · 365 citations · Full text

Identification of alternative topological domains in chromatin

Darya Filippova, Rob Patro, Geet Duggal et al. · Algorithms for Molecular Biology · 2014 · 240 citations · Full text