Concepedia

Sequence Assembly

Sequence Assembly is the computational process of reconstructing a complete DNA or RNA sequence by aligning and merging overlapping fragments generated through sequencing technologies.

2.3K

Publications

546.9K

Citations

12.2K

Authors

2.5K

Institutions

Publications per year

2017–2026

950

Parents

Children

Publications

2.3K

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

Anton Bankevich, Sergey Nurk, Dmitry Antipov et al. · Journal of Computational Biology · 2012 · 27.2K citations

, , +17

HISAT: a fast spliced aligner with low memory requirements

Daehwan Kim, Ben Langmead, Steven L. Salzberg · Nature Methods · 2015 · 26.1K citations · Full text

, , +3

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Manfred Grabherr, Brian J. Haas, Moran Yassour et al. · Nature Biotechnology · 2011 · 22.6K citations · Full text

, , +13

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

Felipe A. Simão, Robert M. Waterhouse, Panagiotis Ioannidis et al. · Bioinformatics · 2015 · 14.5K citations · Full text

, , +17

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Daehwan Kim, Geo Pertea, Cole Trapnell et al. · Genome biology · 2013 · 13.7K citations · Full text

, , +14

1–5 of 2.3K

Authors

12.2K

  1. SK
    Sergey Koren

    National Human Genome Research Institute, United States

    48 publications · 27.1K citations

    35

    h-index

  2. AM
    Adam M. Phillippy

    National Human Genome Research Institute, United States

    38 publications · 25.7K citations

    30

    h-index

  3. İB
    İnanç Birol

    Canada's Michael Smith Genome Sciences Centre, Canada

    29 publications · 8.1K citations

    23

    h-index

  4. SL
    Steven L. Salzberg

    Johns Hopkins University, United States

    24 publications · 44.2K citations

    23

    h-index

  5. EE
    Evan E. Eichler

    University of Washington, United States

    26 publications · 4.7K citations

    22

    h-index

1–5 of 12.2K

Institutions

2.5K

  1. Wellcome Sanger Institute

    Cambridge, United Kingdom

    50 h-index

    388 publications

    147.5K citations

  2. Howard Hughes Medical Institute

    Chevy Chase, United States

    50 h-index

    144 publications

    72.1K citations

  3. University of Washington

    Seattle, United States

    46 h-index

    239 publications

    66.6K citations

  4. Chinese Academy of Sciences

    Beijing, China

    46 h-index

    296 publications

    35.6K citations

  5. National Institutes of Health

    Bethesda, United States

    43 h-index

    263 publications

    101.9K citations

  6. University of California, Davis

    Davis, United States

    41 h-index

    161 publications

    38.2K citations

  7. Centre National de la Recherche Scientifique

    Paris, France

    40 h-index

    273 publications

    35.2K citations

  8. University of California, Berkeley

    Berkeley, United States

    39 h-index

    153 publications

    56.7K citations

1–8 of 2.5K

Venues

  1. Bioinformatics

    176 publications · 71.3K citations

    77

    h-index

  2. Genome Research

    GR · 103 publications · 70.8K citations

    72

    h-index

  3. Nucleic Acids Research

    97 publications · 20.1K citations

    53

    h-index

  4. Genome biology

    61 publications · 34.4K citations

    50

    h-index

  5. BMC Genomics

    98 publications · 9.6K citations

    50

    h-index

1–5