Concepedia

Contig Assembly

Contig Assembly is a computational method in sequence assembly that reconstructs continuous DNA sequences from overlapping sequencing reads, specifically within the context of metagenome assembly, by grouping reads into contiguous sequences (contigs) based on pairwise overlaps and consensus generation.

133

Publications

30.1K

Citations

808

Authors

308

Institutions

Publications per year

2017–2026

28

Parents

Publications

133

SOAPdenovo2: an empirically improved memory-efficient short-read <i>de novo</i> assembler

Ruibang Luo, Binghang Liu, Yinlong Xie et al. · GigaScience · 2012 · 5.6K citations · Full text

, , +17

CAP3: A DNA Sequence Assembly Program

Xiaoqiu Huang, Anup Madan · Genome Research · 1999 · 5.3K citations · Full text

, , +16

<i>Consed:</i> A Graphical Tool for Sequence Finishing

David Gordon, Chris Abajian, Phil Green · Genome Research · 1998 · 3.3K citations · Full text

, , +17

Scaffolding pre-assembled contigs using SSPACE

Marten Boetzer, Christiaan V. Henkel, Hans J. Jansen et al. · Bioinformatics · 2010 · 2.5K citations · Full text

, , +16

A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data

David A. Coil, Guillaume Jospin, Aaron E. Darling · Bioinformatics · 2014 · 1.2K citations · Full text

, , +12

1–5 of 133

Authors

808

  1. XH
    Xiaoqiu Huang

    Iowa State University, United States

    4 publications · 5.8K citations

    4

    h-index

  2. CN
    Chris Newbold

    John Radcliffe Hospital, United Kingdom

    3 publications · 811 citations

    3

    h-index

  3. MB
    Matthew Berriman

    Wellcome Sanger Institute, United Kingdom

    3 publications · 811 citations

    3

    h-index

  4. SL
    Steven L. Salzberg

    Johns Hopkins University, United States

    3 publications · 252 citations

    3

    h-index

  5. JŠ
    Jan Šafář

    Czech Academy of Sciences, Institute of Experimental Botany, Czechia

    3 publications · 93 citations

    3

    h-index

1–5 of 808

Institutions

308

  1. Agricultural Research Service

    Washington, United States

    7 h-index

    23 publications

    1.1K citations

  2. Wellcome Sanger Institute

    Cambridge, United Kingdom

    6 h-index

    22 publications

    5.5K citations

  3. Chinese Academy of Sciences

    Beijing, China

    6 h-index

    21 publications

    1.3K citations

  4. Texas A&M University

    College Station, United States

    5 h-index

    29 publications

    4.1K citations

  5. Centre National de la Recherche Scientifique

    Paris, France

    4 h-index

    29 publications

    1.5K citations

  6. University of Arizona

    Tucson, United States

    4 h-index

    8 publications

    1.2K citations

  7. Washington University in St. Louis

    St Louis, United States

    4 h-index

    22 publications

    605 citations

  8. University of California, Davis

    Davis, United States

    4 h-index

    16 publications

    4.4K citations

1–8 of 308

Venues

  1. BMC Genomics

    11 publications · 589 citations

    11

    h-index

  2. Bioinformatics

    11 publications · 5.2K citations

    11

    h-index

  3. BMC Bioinformatics

    9 publications · 479 citations

    9

    h-index

  4. Nucleic Acids Research

    9 publications · 2K citations

    9

    h-index

  5. Genome Research

    GR · 8 publications · 9.4K citations

    8

    h-index

1–5