Concepedia

Assembly Graphs

An Assembly Graph is a directed graph structure used in sequence assembly that represents overlaps among sequencing reads, where nodes correspond to reads or contigs and edges depict their potential adjacencies based on sequence similarity, enabling the inference of the underlying genomic sequence.

84

Publications

16.3K

Citations

259

Authors

141

Institutions

Publications per year

2017–2026

39

Variants

Assembly Graph

Parents

Publications

84

Assembly of long, error-prone reads using repeat graphs

Mikhail Kolmogorov, Jeffrey Yuan, Yu Lin et al. · Nature Biotechnology · 2019 · 6.3K citations

, , +13

Bandage: interactive visualization of <i>de novo</i> genome assemblies

Ryan R. Wick, Mark B. Schultz, Justin Zobel et al. · Bioinformatics · 2015 · 3.2K citations · Full text

, , +13

Integrating Hi-C links with assembly graphs for chromosome-scale assembly

Jay Ghurye, Arang Rhie, Brian P. Walenz et al. · PLoS Computational Biology · 2019 · 763 citations · Full text

, , +17

How to apply de Bruijn graphs to genome assembly

Phillip E. C. Compeau, Pavel A. Pevzner, Glenn Tesler · Nature Biotechnology · 2011 · 688 citations · Full text

, , +12

AND/OR Graph Representation of Assembly Plans

Luiz S. Homem de Mello · 1986 · 683 citations

, , +13

1–5 of 84

Authors

259

  1. YL
    Yu Lin

    Australian National University, Australia

    4 publications · 6.5K citations

    4

    h-index

  2. PA
    Pavel A. Pevzner

    University of California San Diego, United States

    4 publications · 7.4K citations

    4

    h-index

  3. VM
    Vijini Mallawaarachchi

    Flinders University, Australia

    3 publications · 159 citations

    3

    h-index

  4. JH
    J.M. Henrioud

    École Nationale Supérieure de Mécanique et des Microtechniques, France

    3 publications · 56 citations

    3

    h-index

  5. LS
    Luiz S. Homem de Mello

    Rensselaer Polytechnic Institute, United States

    3 publications · 1K citations

    3

    h-index

1–5 of 259

Institutions

141

  1. University of California San Diego

    San Diego, United States

    5 h-index

    11 publications

    21.5K citations

  2. National Human Genome Research Institute

    Bethesda, United States

    5 h-index

    14 publications

    4.3K citations

  3. St Petersburg University

    Saint Petersburg, Russia

    4 h-index

    10 publications

    1.2K citations

  4. Australian National University

    Canberra, Australia

    4 h-index

    9 publications

    6.8K citations

  5. Centre National de la Recherche Scientifique

    Paris, France

    4 h-index

    9 publications

    489 citations

  6. Rensselaer Polytechnic Institute

    Troy, United States

    3 h-index

    3 publications

    1K citations

  7. University of Maryland, College Park

    College Park, United States

    3 h-index

    5 publications

    2.1K citations

  8. Wellcome Sanger Institute

    Cambridge, United Kingdom

    3 h-index

    4 publications

    619 citations

1–8 of 141

Venues

  1. Bioinformatics

    16 publications · 4.8K citations

    14

    h-index

  2. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 8 publications · 189 citations

    8

    h-index

  3. BMC Bioinformatics

    5 publications · 630 citations

    5

    h-index

  4. Journal of Computational Biology

    5 publications · 181 citations

    5

    h-index

  5. Theoretical Computer Science

    2 publications · 50 citations

    2

    h-index

1–5