Concepedia

Reference-guided Assembly

Reference-Guided Assembly is a genome assembly strategy that reconstructs a target genome by mapping sequencing reads or preliminary contigs to one or more closely related reference genomes and inferring their order and orientation from their alignment positions, rather than relying solely on overlaps among the reads themselves.

80

Publications

10.9K

Citations

416

Authors

201

Institutions

Publications per year

2017–2026

30

Variants

Reference-guided Genome Assembly

Parents

Children

Publications

80

Transcriptome assembly from long-read RNA-seq alignments with StringTie2

Sam Kovaka, Aleksey V. Zimin, Geo Pertea et al. · Genome biology · 2019 · 2.1K citations · Full text

, , +17

Mind the Gap: Upgrading Genomes with Pacific Biosciences RS Long-Read Sequencing Technology

Adam C. English, Stephen M. Richards, Yi Han et al. · PLoS ONE · 2012 · 992 citations · Full text

, , +13

RaGOO: fast and accurate reference-guided scaffolding of draft genomes

Michael Alonge, Sebastian Soyk, Srividya Ramakrishnan et al. · Genome biology · 2019 · 764 citations · Full text

, , +17

Navigating the tip of the genomic iceberg: Next‐generation sequencing for plant systematics

Shannon C. K. Straub, Matthew Parks, Kevin Weitemier et al. · American Journal of Botany · 2011 · 729 citations · Full text

, , +17

KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies

Daniel Mapleson, Gonzalo Garcia Accinelli, George Kettleborough et al. · Bioinformatics · 2016 · 601 citations · Full text

, , +17

1–5 of 80

Authors

416

  1. MC
    Michael C. Schatz

    Johns Hopkins University, United States

    3 publications · 983 citations

    3

    h-index

  2. WJ
    William J. Dally

    Stanford University, United States

    3 publications · 198 citations

    3

    h-index

  3. SP
    Son Pham

    University of California San Diego, United States

    3 publications · 360 citations

    3

    h-index

  4. YT
    Yatish Turakhia

    University of California, Santa Cruz, United States

    3 publications · 198 citations

    3

    h-index

  5. BJ
    Brian J. Raney

    University of California, Santa Cruz, United States

    3 publications · 360 citations

    3

    h-index

1–5 of 416

Institutions

201

  1. European Bioinformatics Institute

    Cambridge, United Kingdom

    5 h-index

    11 publications

    1.2K citations

  2. Earlham Institute

    Norwich, United Kingdom

    4 h-index

    12 publications

    3.4K citations

  3. Johns Hopkins University

    Baltimore, United States

    4 h-index

    18 publications

    15.7K citations

  4. Cold Spring Harbor Laboratory

    Cold Spring Harbor, United States

    4 h-index

    13 publications

    4.4K citations

  5. Stanford University

    Stanford, United States

    4 h-index

    14 publications

    726 citations

  6. Norwich Research Park

    Norwich, United Kingdom

    4 h-index

    12 publications

    3.4K citations

  7. University of California, Berkeley

    Berkeley, United States

    4 h-index

    7 publications

    467 citations

  8. University of California, Davis

    Davis, United States

    3 h-index

    6 publications

    1.5K citations

1–8 of 201

Venues

  1. PLoS ONE

    10 publications · 1.6K citations

    10

    h-index

  2. Bioinformatics

    10 publications · 1.2K citations

    10

    h-index

  3. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 6 publications · 253 citations

    6

    h-index

  4. BMC Genomics

    6 publications · 325 citations

    6

    h-index

  5. BMC Bioinformatics

    4 publications · 363 citations

    4

    h-index

1–5