Concepedia

Read Placement

Read Placement is a computational method in reference-guided assembly that determines the optimal alignment position of sequencing reads to a reference genome or transcriptome, distinguishing it from de novo assembly strategies by relying on existing genomic context to guide accurate reconstruction.

8

Publications

658

Citations

30

Authors

17

Institutions

Publications per year

2017–2026

2

Parents

Publications

8

SILVA, RDP, Greengenes, NCBI and OTT — how do these taxonomies compare?

Monika Balvočiūtė, Daniel H. Huson · BMC Genomics · 2017 · 417 citations · Full text

, , +14

Evaluating Characteristics of De Novo Assembly Software on 454 Transcriptome Data: A Simulation Approach

Marvin Mundry, Erich Bornberg‐Bauer, Michael Sammeth et al. · PLoS ONE · 2012 · 83 citations · Full text

, , +17

ContextMap 2: fast and accurate context-based RNA-seq mapping

Thomas Bonfert, Evelyn Kirner, Gergely Csaba et al. · BMC Bioinformatics · 2015 · 77 citations · Full text

, , +17

SMRDB

Rekha Pitchumani, J. S. Hughes, Ethan L. Miller · 2015 · 36 citations

, , +13

BM-Map: an efficient software package for accurately allocating multireads of RNA-sequencing data

Yuan Yuan, Clift Norris, Yanxun Xu et al. · BMC Genomics · 2012 · 13 citations · Full text

, , +12

1–5 of 8

Authors

30

  1. SH
    Steffen Heber

    North Carolina State University, United States

    1 publications · 10 citations

    1

    h-index

  2. AM
    Aleksandr Morgulis

    National Center for Biotechnology Information, United States

    1 publications · 11 citations

    1

    h-index

  3. DZ
    Degui Zhi

    University of Alabama at Birmingham, United States

    1 publications · 10 citations

    1

    h-index

  4. DR
    Doron Rotem

    Lawrence Berkeley National Laboratory, United States

    1 publications · 11 citations

    1

    h-index

  5. MM
    Marvin Mundry

    Institute for Biodiversity, Germany

    1 publications · 83 citations

    1

    h-index

1–5 of 30

Institutions

17

  1. Indiana University Bloomington

    Bloomington, United States

    1 h-index

    1 publications

    10 citations

  2. Rice University

    Houston, United States

    1 h-index

    1 publications

    13 citations

  3. The University of Texas MD Anderson Cancer Center

    Houston, United States

    1 h-index

    5 publications

    65 citations

  4. Centro Nacional de Análisis Genómico

    Barcelona, Spain

    1 h-index

    1 publications

    83 citations

  5. Cornell University

    Ithaca, United States

    1 h-index

    1 publications

    10 citations

  6. University of California San Diego

    San Diego, United States

    1 h-index

    2 publications

    20 citations

  7. University of Tübingen

    Tübingen, Germany

    1 h-index

    2 publications

    834 citations

  8. Ludwig-Maximilians-Universität München

    Munich, Germany

    1 h-index

    5 publications

    385 citations

1–8 of 17

Venues

  1. BMC Genomics

    2 publications · 430 citations

    2

    h-index

  2. GigaScience

    1 publications · 11 citations

    1

    h-index

  3. Location Science

    1 publications · 11 citations

    1

    h-index

  4. PLoS ONE

    1 publications · 83 citations

    1

    h-index

  5. BMC Bioinformatics

    1 publications · 77 citations

    1

    h-index

1–5