Concepedia

Iterative Assembly Refinement

Iterative Assembly Refinement is a computational method in reference-guided assembly that progressively enhances the accuracy and completeness of genome reconstructions by repeatedly aligning sequencing reads to an evolving assembly and adjusting structural and sequence-level errors based on alignment discrepancies.

24

Publications

1.8K

Citations

137

Authors

68

Institutions

Publications per year

2017–2026

13

Parents

Publications

24

STRUM: structure-based prediction of protein stability changes upon single-point mutation

Lijun Quan, Qiang Lv, Yang Zhang · Bioinformatics · 2016 · 340 citations · Full text

, , +17

Whole-Genome Sequence Assembly for Mammalian Genomes: Arachne 2

David B. Jaffe, Jonathan A. Butler, Sante Gnerre et al. · Genome Research · 2003 · 304 citations · Full text

, , +13

Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps

Isheng Jason Tsai, Thomas D. Otto, Matthew Berriman · Genome biology · 2010 · 293 citations · Full text

, , +15

Viral deep sequencing needs an adaptive approach: IRMA, the iterative refinement meta-assembler

Samuel S. Shepard, Sarah Meno, Justin Bahl et al. · BMC Genomics · 2016 · 237 citations · Full text

, , +17

RAIphy: Phylogenetic classification of metagenomics samples using iterative refinement of relative abundance index profiles

Özkan Ufuk Nalbantoğlu, Samuel F. Way, Steven H. Hinrichs et al. · BMC Bioinformatics · 2011 · 124 citations · Full text

, , +17

1–5 of 24

Authors

137

  1. YZ
    Yang Zhang

    University of Michigan, United States

    3 publications · 445 citations

    3

    h-index

  2. TD
    Thomas D. Otto

    Wellcome Sanger Institute, United Kingdom

    2 publications · 306 citations

    2

    h-index

  3. YC
    Yucai Chen

    Shanghai Children's Hospital, China

    1 publications · 13 citations

    1

    h-index

  4. IN
    Ill–Sup Nou

    Sunchon National University, South Korea

    1 publications · 11 citations

    1

    h-index

  5. LK
    Leyla Kern

    ETH Zurich, Switzerland

    1 publications · 27 citations

    1

    h-index

1–5 of 137

Institutions

68

  1. University of Michigan

    Ann Arbor, United States

    2 h-index

    8 publications

    550 citations

  2. Centers for Disease Control and Prevention

    Atlanta, United States

    2 h-index

    11 publications

    1.3K citations

  3. University of Wisconsin–Madison

    Madison, United States

    2 h-index

    4 publications

    71 citations

  4. Washtenaw Community College

    Ann Arbor, United States

    1 h-index

    1 publications

    340 citations

  5. Shanghai Children's Hospital

    Shanghai, China

    1 h-index

    1 publications

    13 citations

  6. Cornell University

    Ithaca, United States

    1 h-index

    1 publications

    10 citations

  7. Peking University

    Beijing, China

    1 h-index

    5 publications

    255 citations

  8. Professional Services Group (United States)

    Sarasota, United States

    1 h-index

    1 publications

    20 citations

1–8 of 68

Venues

  1. Briefings in Bioinformatics

    2 publications · 49 citations

    2

    h-index

  2. Medicine

    1 publications · 13 citations

    1

    h-index

  3. Genome Research

    GR · 1 publications · 304 citations

    1

    h-index

  4. Journal of Clinical Microbiology

    JCM · 1 publications · 18 citations

    1

    h-index

  5. Journal of Computational Biology

    1 publications · 17 citations

    1

    h-index

1–5