Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic

Gavin J. D. Smith, Dhanasekaran Vijaykrishna, Justin Bahl, +9

Nature

Dating the emergence of pandemic influenza viruses

Gavin J. D. Smith, Justin Bahl, Dhanasekaran Vijaykrishna, +6

Proceedings of the National Academy of Sciences

Viral EvolutionVirus EpidemiologyEmergent VirusH1n1 Pandemic VirusVirology +5

Dengue subgenomic RNA binds TRIM25 to inhibit interferon expression for epidemiological fitness

Gayathri Manokaran, Esteban Finol, Chunling Wang, +10

Science

Global SpreadViral ReplicationPuerto RicoGeneticsImmunology +16

Updated unified phylogenetic classification system and revised nomenclature for Newcastle disease virus

Kiril M. Dimitrov, Célia Abolnik, Claudio L. Afonso, +36

Infection Genetics and Evolution

2020 taxonomic update for phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales

Jens H. Kuhn, Scott Adkins, D. Alioto, +223

Archives of Virology

Taxonomic UpdateLarge Orders BunyaviralesPhylogeneticsPhylum NegarnaviricotaNatural Sciences +6

The Genesis and Evolution of H9N2 Influenza Viruses in Poultry from Southern China, 2000 to 2005

Kemin Xu, Gavin J. D. Smith, Justin Bahl, +11

Journal of Virology

Viral EvolutionPoultry DiseaseGeneticsPathogenesisEvolutionary Biology +12

Long-term evolution and transmission dynamics of swine influenza A virus

Dhanasekaran Vijaykrishna, Gavin J. D. Smith, Oliver G. Pybus, +13

Nature

BiologyViral EvolutionEvolutionary DynamicsLong-term EvolutionNatural Sciences +5

The influenza virus hemagglutinin head evolves faster than the stalk domain

Ericka Kirkpatrick, Xueting Qiu, Patrick C. Wilson, +2

Scientific Reports

Viral deep sequencing needs an adaptive approach: IRMA, the iterative refinement meta-assembler

Samuel S. Shepard, Sarah Meno, Justin Bahl, +3

BMC Genomics

Ancient origins determine global biogeography of hot and cold desert cyanobacteria

Justin Bahl, Maggie C. Y. Lau, Gavin J. D. Smith, +9

Nature Communications