MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment

Sudhir Kumar

Briefings in Bioinformatics

Comparative GenomicsGeneticsMolecular GeneticsComparative DnaGenomics +17

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

Helga Thorvaldsdóttir, James Robinson, Jill P. Mesirov

Briefings in Bioinformatics

MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization

Kazutaka Katoh, John Rozewicki, Kazunori Yamada

Briefings in Bioinformatics

GeneticsGenomicsSequence AlignmentBioinformatics DatabaseHigh Throughput Sequencing +20

Recent developments in the MAFFT multiple sequence alignment program

Kazutaka Katoh, Hidehiro Toh

Briefings in Bioinformatics

Recent DevelopmentsFunctional GenomicsBioinformatics DatabaseMedicineGenetics +13

MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences

Sudhir Kumar, M Nei, Joel T. Dudley, +1

Briefings in Bioinformatics

Comparative GenomicsGeneticsGenomicsSequence AlignmentDesktop Application +21

Molecular Modelling: Principles and Applications

José Ramón Valverde

Briefings in Bioinformatics

EngineeringGeneticsComputational ChemistryGenomicsBioinformatics Database +19

oncoPredict: an R package for predicting <i>in vivo</i> or cancer patient drug response and biomarkers from cell line screening data

Danielle Maeser, Robert F. Gruener, R. Stephanie Huang

Briefings in Bioinformatics

Cell Line DrugEngineeringDrug TargetR PackageOncology +18

A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

Marie‐Agnès Dillies, Andréa Rau, Julie Aubert, +16

Briefings in Bioinformatics

EngineeringGeneticsTranscriptomics TechnologyGenomicsHigh Throughput Sequencing +19

Gene co-expression analysis for functional classification and gene–disease predictions

Sipko van Dam, Urmo Võsa, Adriaan van der Graaf, +2

Briefings in Bioinformatics

EngineeringGeneticsGene Regulatory NetworkGene RecognitionGene Expression Profiling +17

Using Tablet for visual exploration of second-generation sequencing data

Iain Milne, Gordon Stephen, Micha Bayer, +5

Briefings in Bioinformatics