Alignment-Based Assembly is a computational method in reference-guided assembly that leverages pairwise sequence alignment to a reference genome as the guiding framework for reconstructing novel genomes, distinguishing itself by explicitly using alignment coordinates and conservation signals to inform contig construction and genomic variant inference.
53
Publications
4.9K
Citations
370
Authors
150
Institutions
Publications per year
2017–2026
22
Parents
Publications
53
RaGOO: fast and accurate reference-guided scaffolding of draft genomes
Michael Alonge, Sebastian Soyk, Srividya Ramakrishnan et al. · Genome biology · 2019 · 764 citations · Full text
An improved genome release (version Mt4.0) for the model legume Medicago truncatula
Haibao Tang, Vivek Krishnakumar, Shelby Bidwell et al. · BMC Genomics · 2014 · 479 citations · Full text
Assembly of a pan-genome from deep sequencing of 910 humans of African descent
Rachel M. Sherman, Juliet Forman, Valentin Antonescu et al. · Nature Genetics · 2018 · 417 citations · Full text
Contigs Built with Fingerprints, Markers, and FPC V4.7
Carol Soderlund · Genome Research · 2000 · 323 citations · Full text
Shotgun sequence assembly and recent segmental duplications within the human genome
Xinwei She, Zhaoshi Jiang, Royden A. Clark et al. · Nature · 2004 · 274 citations · Full text
1–5 of 53
Authors
370
- MC
2
h-index
- TV
2
h-index
- KB
2
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- PM
2
h-index
- AJ
2
h-index
1–5 of 370
Institutions
150
Max Planck Society
Munich, Germany
3 h-index
4 publications
83 citations
ETH Zurich
Zurich, Switzerland
2 h-index
7 publications
304 citations
University of Arizona
Tucson, United States
2 h-index
4 publications
912 citations
Centre National de la Recherche Scientifique
Paris, France
2 h-index
2 publications
586 citations
Moredun Research Institute
Penicuik, United Kingdom
2 h-index
10 publications
245 citations
University of California San Diego
San Diego, United States
2 h-index
5 publications
900 citations
University of Washington
Seattle, United States
2 h-index
6 publications
1.4K citations
10X Genomics (United States)
Pleasanton, United States
2 h-index
5 publications
772 citations
1–8 of 150
Venues
- Genome Research
GR · 5 publications · 943 citations
5
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- BMC Genomics
4 publications · 560 citations
4
h-index
- Genome biology
3 publications · 915 citations
3
h-index
- Nucleic Acids Research
2 publications · 232 citations
2
h-index
- Bioinformatics
2 publications · 135 citations
2
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1–5