mBio · 2022 · 29 citations · 52 references
Life SciencesGeneticsMicrobiologyGenome AssemblyGenomicsMycologyComparative Microbial GenomicsFungal GeneticsFungal GenomicsGenome SequencingPathogen GenomicsSequence AssemblyChromosome-level AssemblyChromosome-scale AssemblyComparative Fungal GenomicsFungal Genetic DiversityFungal Genome OrganizationFungal Genome SequencingPathogen Genome AssemblyTranscriptome Sequencing
strains using long-read sequencing technology. Comparative analysis of these genomes shows largely conserved gene order within the chromosomes. Mapping existing transcriptome data on these new assemblies reveals clustering of transcriptionally coregulated genes. The results of this study highlight the importance of obtaining chromosome-level assemblies in understanding the biology of human fungal pathogens.
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Minimap2: pairwise alignment for nucleotide sequences
Heng Li · Bioinformatics · 2018 · 16.8K citations · Full text
Bruce J. Walker, Thomas Abeel, Terrance Shea et al. · PLoS ONE · 2014 · 10.2K citations · Full text
<tt>BLAT</tt>—The <tt>BLAST</tt>-Like Alignment Tool
W. James Kent · Genome Research · 2002 · 8.4K citations · Full text
Assembly of long, error-prone reads using repeat graphs
Mikhail Kolmogorov, Jeffrey Yuan, Yu Lin et al. · Nature Biotechnology · 2019 · 6.3K citations