Concepedia

Pathogen Genome Assembly

Pathogen Genome Assembly is a computational method in pathogen genomics that reconstructs the complete genomic sequence of a pathogen from fragmented sequencing reads by aligning and merging overlapping sequences to generate a contiguous and accurate representation of the organism's genome.

283

Publications

12K

Citations

2K

Authors

654

Institutions

Publications per year

2017–2026

134

Parents

Publications

283

The EnteroBase user's guide, with case studies on <i>Salmonella</i> transmissions, <i>Yersinia pestis</i> phylogeny, and <i>Escherichia</i> core genomic diversity

Zhemin Zhou, Nabil-Fareed Alikhan, Khaled Mohamed et al. · Genome Research · 2019 · 1K citations · Full text

, , +17

SKESA: strategic k-mer extension for scrupulous assemblies

Alexandre Souvorov, Richa Agarwala, David J. Lipman · Genome biology · 2018 · 709 citations · Full text

, , +15

The complete genome sequence of Francisella tularensis, the causative agent of tularemia

Pär Larsson, Petra C. F. Oyston, Patrick Chain et al. · Nature Genetics · 2005 · 448 citations

, , +16

Strategy for Systematic Assembly of Large RNA and DNA Genomes: Transmissible Gastroenteritis Virus Model

Boyd L. Yount, Kristopher M. Curtis, Ralph S. Baric · Journal of Virology · 2000 · 273 citations

, , +15

Standard methods for American foulbrood research

Dirk C. de Graaf, Adriana Mónica Alippi, Karina Antúnez et al. · Journal of Apicultural Research · 2013 · 226 citations · Full text

, , +16

1–5 of 283

Authors

2K

  1. PC
    Patrick Chain

    Los Alamos National Laboratory, United States

    10 publications · 625 citations

    10

    h-index

  2. SL
    Shannon L. Johnson

    Los Alamos National Laboratory, United States

    9 publications · 177 citations

    9

    h-index

  3. KW
    Karen W. Davenport

    Los Alamos National Laboratory, United States

    8 publications · 158 citations

    8

    h-index

  4. DB
    David Bruce

    Los Alamos National Laboratory, United States

    7 publications · 136 citations

    7

    h-index

  5. TD
    Timothy D. Minogue

    United States Army Medical Research Institute of Infectious Diseases, United States

    6 publications · 120 citations

    6

    h-index

1–5 of 2K

Institutions

654

  1. University of Oxford

    Oxford, United Kingdom

    10 h-index

    56 publications

    3.4K citations

  2. Los Alamos National Laboratory

    Los Alamos, United States

    9 h-index

    64 publications

    1.3K citations

  3. University of Maryland, College Park

    College Park, United States

    9 h-index

    21 publications

    1.3K citations

  4. Agricultural Research Service

    Washington, United States

    9 h-index

    24 publications

    1.1K citations

  5. University of California, Davis

    Davis, United States

    8 h-index

    39 publications

    871 citations

  6. Center for Food Safety and Applied Nutrition

    College Park, United States

    8 h-index

    48 publications

    1.5K citations

  7. Centers for Disease Control and Prevention

    Atlanta, United States

    8 h-index

    61 publications

    2.3K citations

  8. United States Army Medical Research Institute of Infectious Diseases

    Frederick, United States

    7 h-index

    38 publications

    827 citations

1–8 of 654

Venues

  1. Genome Announcements

    GenomeA · 70 publications · 1.5K citations

    23

    h-index

  2. Journal of Bacteriology

    JB · 30 publications · 934 citations

    19

    h-index

  3. BMC Genomics

    14 publications · 800 citations

    13

    h-index

  4. Microbiology Resource Announcements

    MRA · 14 publications · 264 citations

    12

    h-index

  5. Molecular Plant-Microbe Interactions

    MPMI · 14 publications · 373 citations

    12

    h-index

1–5