Nature · 2015 · 150 citations · 36 references
Life SciencesBiologyImmunologyAdaptive ImmunityCellular ImmunologyImmunoregulationImmune ToleranceRegulatory T CellsT Cell ActivationT Cell BiologyT Cell DifferentiationTolerance MechanismsSelf-tolerance EstablishmentT Cell Repertoire SelectionT-cell Regulation
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Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text
Differential expression analysis for sequence count data
Simon Anders, Wolfgang Huber · Genome biology · 2010 · 16.4K citations · Full text
Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells
Yukihiro Furusawa, Yuuki Obata, Shinji Fukuda et al. · Nature · 2013 · 5.3K citations
Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation
Nicholas Arpaia, Clarissa Campbell, Xiying Fan et al. · Nature · 2013 · 4.7K citations · Full text