VDJtools: Unifying Post-analysis of T Cell Receptor Repertoires

Mikhail Shugay, Dmitriy V. Bagaev, Maria A. Turchaninova, +8

PLoS Computational Biology

Adaptive Immune SystemT-regulatory CellImmunologyAntigen ProcessingImmunotherapy +14

VDJdb: a curated database of T-cell receptor sequences with known antigen specificity

Mikhail Shugay, Dmitriy V. Bagaev, Ivan V. Zvyagin, +24

Nucleic Acids Research

Adaptive Immune SystemT-regulatory CellImmunologyCurated DatabaseAntigen Processing +18

Age-Related Decrease in TCR Repertoire Diversity Measured with Deep and Normalized Sequence Profiling

Olga V. Britanova, Ekaterina V. Putintseva, Mikhail Shugay, +8

The Journal of Immunology

Towards error-free profiling of immune repertoires

Mikhail Shugay, Olga V. Britanova, Ekaterina M. Merzlyak, +12

Nature Methods

Autoimmune DiseaseAllergyArtificial Immune SystemImmunologyImmunological Computing +5

VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium

Dmitry Bagaev, Renske M. A. Vroomans, Jerome Samir, +15

Nucleic Acids Research

Antigen receptor repertoire profiling from RNA-seq data

Dmitriy A. Bolotin, Alexey N. Davydov, Felix Frenkel, +10

Nature Biotechnology

Systems BiologyFunctional GenomicsImmunologyTranscriptomics TechnologyAntigen Processing +4

SARS-CoV-2 Epitopes Are Recognized by a Public and Diverse Repertoire of Human T Cell Receptors

Alina S. Shomuradova, Murad Vagida, Savely A. Sheetikov, +20

Immunity

T-regulatory CellImmunologyDiverse RepertoireImmunodominanceAntigen Processing +5

tcR: an R package for T cell receptor repertoire advanced data analysis

Vadim I. Nazarov, Mikhail V. Pogorelyy, Ekaterina A. Komech, +6

BMC Bioinformatics

High-quality full-length immunoglobulin profiling with unique molecular barcoding

Maria A. Turchaninova, Albert V. Davydov, Olga V. Britanova, +12

Nature Protocols

ImmunologyHigh-quality Full-length ImmunoglobulinAntibody ScreeningImmunochemistryImmunotherapy +2

Dynamics of Individual T Cell Repertoires: From Cord Blood to Centenarians

Olga V. Britanova, Mikhail Shugay, Ekaterina M. Merzlyak, +13

The Journal of Immunology