<tt>andi</tt>: Fast and accurate estimation of evolutionary distances between closely related genomes

Basic local alignment search tool

Stephen F. Altschul, Warren Gish, Webb Miller et al. · Journal of Molecular Biology · 1990 · 92.8K citations

Bioinformatics, Engineering, Information Retrieval +10

Versatile and open software for comparing large genomes

Stefan Kurtz, Adam M. Phillippy, Arthur L. Delcher et al. · Genome biology · 2004 · 5.7K citations · Full text

Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements

Aaron E. Darling, Bob Mau, Frederick R. Blattner et al. · Genome Research · 2004 · 5.1K citations · Full text

Phylogenetics, Molecular Ecology, Frequent Genome Rearrangements +14

Inferring Phylogenies.

Stephen Wooding · The American Journal of Human Genetics · 2004 · 3.1K citations · Full text

Comparison of phylogenetic trees

D. F. Robinson, L. R. Foulds · Mathematical Biosciences · 1981 · 2.9K citations

Biology, Biodiversity, Phylogenetics +6