PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses

Shaun Purcell, Benjamin M. Neale, Katherine EO Todd-Brown, +8

The American Journal of Human Genetics

Genome-wide Association StudyWhole-genome AssociationLinkage DisequilibriumGenotype-phenotype AssociationPopulation-based Linkage Analyses +10

GCTA: A Tool for Genome-wide Complex Trait Analysis

Jian Yang, Sang Lee, Michael E. Goddard, +1

The American Journal of Human Genetics

Genome-wide Association StudyGenotype-phenotype AssociationGeneticsComputational GenomicsStatistical Genetics +3

A New Statistical Method for Haplotype Reconstruction from Population Data

Matthew Stephens, Nicholas Smith, Peter Donnelly

The American Journal of Human Genetics

Genetic AnalysisHaplotype ReconstructionHaplotype DeterminationGenotype-phenotype AssociationMolecular Ecology +9

A Comparison of Bayesian Methods for Haplotype Reconstruction from Population Genotype Data

Matthew Stephens, Peter Donnelly

The American Journal of Human Genetics

Haplotype ReconstructionBayesian StatisticsHaplotype DeterminationGenotype-phenotype AssociationMolecular Ecology +13

Rapid and Accurate Haplotype Phasing and Missing-Data Inference for Whole-Genome Association Studies By Use of Localized Haplotype Clustering

Sharon R. Browning, Brian L. Browning

The American Journal of Human Genetics

Genome-wide Association StudyGenetic AnalysisLocalized Haplotype ClusteringHaplotype DeterminationGenotype-phenotype Association +12

Inferring Phylogenies.

Stephen Wooding

The American Journal of Human Genetics

Multipoint Quantitative-Trait Linkage Analysis in General Pedigrees

Laura Almasy, John Blangero

The American Journal of Human Genetics

Linkage DisequilibriumQuantitative GeneticsGenotype-phenotype AssociationGeneral PedigreesGenetics +7

Genetic Heterogeneity and Penetrance Analysis of the BRCA1 and BRCA2 Genes in Breast Cancer Families

Deborah Ford, Douglas F. Easton, Michael R. Stratton, +35

The American Journal of Human Genetics

REVEL: An Ensemble Method for Predicting the Pathogenicity of Rare Missense Variants

Nilah M. Ioannidis, Joseph H. Rothstein, Vikas Pejaver, +38

The American Journal of Human Genetics

Genome-wide Association StudyAllelic VariantGenotype-phenotype AssociationMedicineGenetics +12

Rare-Variant Association Testing for Sequencing Data with the Sequence Kernel Association Test

Michael C. Wu, Seunggeun Lee, Tianxi Cai, +3

The American Journal of Human Genetics

BioinformaticsGenome-wide Association StudyMedicineGeneticsRare-variant Association Testing +10