Ungapped Alignment is a read mapping strategy that aligns sequencing reads to a reference genome without allowing insertions or deletions, thereby restricting mismatches to substitutions only.
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2017–2026
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34
Accelerated Profile HMM Searches
Sean R. Eddy · PLoS Computational Biology · 2011 · 7.5K citations · Full text
SOAP: short oligonucleotide alignment program
Ruiqiang Li, Yingrui Li, Karsten Kristiansen et al. · Bioinformatics · 2008 · 3.7K citations · Full text
Efficient large-scale sequence comparison by locality-sensitive hashing
Jeremy Buhler · Bioinformatics · 2001 · 266 citations · Full text
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1–5 of 112
Institutions
55
Howard Hughes Medical Institute
Chevy Chase, United States
4 h-index
9 publications
1.3K citations
SIB Swiss Institute of Bioinformatics
Lausanne, Switzerland
2 h-index
6 publications
78 citations
Janelia Research Campus
Ashburn, United States
2 h-index
3 publications
7.6K citations
University of Göttingen
Göttingen, Germany
2 h-index
4 publications
123 citations
Fred Hutch Cancer Center
Seattle, United States
2 h-index
6 publications
1.2K citations
Morgridge Institute for Research
Madison, United States
1 h-index
8 publications
176 citations
Czech Academy of Sciences, Institute of Microbiology
Prague, Czechia
1 h-index
3 publications
72 citations
Amgen (United States)
Thousand Oaks, United States
1 h-index
1 publications
15 citations
1–8 of 55
Venues
- Bioinformatics
12 publications · 4.8K citations
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- Nucleic Acids Research
4 publications · 235 citations
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- IEEE/ACM Transactions on Computational Biology and Bioinformatics
2 publications · 154 citations
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- Systematic Biology
1 publications · 43 citations
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- Algorithms for Molecular Biology
AMB · 1 publications · 33 citations
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