Concepedia

Gap-enabled Alignment Algorithms

Gap-Enabled Alignment Algorithms is a computational method in bioinformatics that belongs to the class of sequence alignment algorithms and is specifically characterized by its explicit incorporation of gap penalties to model insertion and deletion events in biological sequences.

78

Publications

78.6K

Citations

274

Authors

160

Institutions

Publications per year

2017–2026

5

Parents

Publications

78

Fast gapped-read alignment with Bowtie 2

Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations

, , +11

<tt>BLAT</tt>—The <tt>BLAST</tt>-Like Alignment Tool

W. James Kent · Genome Research · 2002 · 8.4K citations · Full text

, , +16

Human–Mouse Alignments with BLASTZ

Scott Schwartz, W. James Kent, Arian F. A. Smit et al. · Genome Research · 2002 · 1.3K citations · Full text

, , +14

Optimal alignments in linear space

Eugene W. Myers, Webb Miller · Computer applications in the biosciences · 1988 · 1.2K citations

, , +13

Gapped sequence alignment using artificial neural networks: application to the MHC class I system

Massimo Andreatta, Morten Nielsen · Bioinformatics · 2015 · 1.2K citations · Full text

, , +11

1–5 of 78

Authors

274

  1. TF
    Tomáš Flouri

    University College London, United Kingdom

    4 publications · 47 citations

    4

    h-index

  2. SP
    Solon P. Pissis

    King's College London, United Kingdom

    4 publications · 47 citations

    4

    h-index

  3. WM
    Webb Miller

    Pennsylvania State University, United States

    3 publications · 2.5K citations

    3

    h-index

  4. CS
    Costas S. Iliopoulos

    King's College London, United Kingdom

    3 publications · 35 citations

    3

    h-index

  5. RF
    Randall F. Smith

    Baylor College of Medicine, United States

    2 publications · 572 citations

    2

    h-index

1–5 of 274

Institutions

160

  1. Heidelberg Institute for Theoretical Studies

    Heidelberg, Germany

    4 h-index

    9 publications

    105 citations

  2. Pennsylvania State University

    State College, United States

    3 h-index

    12 publications

    12.7K citations

  3. University of Washington

    Seattle, United States

    3 h-index

    9 publications

    210 citations

  4. King's College London

    London, United Kingdom

    3 h-index

    6 publications

    70 citations

  5. University of Florida

    Gainesville, United States

    3 h-index

    3 publications

    107 citations

  6. Harvard University

    Cambridge, United States

    3 h-index

    3 publications

    652 citations

  7. National Institutes of Health

    Bethesda, United States

    2 h-index

    2 publications

    33 citations

  8. University of Maryland, College Park

    College Park, United States

    2 h-index

    4 publications

    122.2K citations

1–8 of 160

Venues

  1. Bioinformatics

    12 publications · 2K citations

    11

    h-index

  2. Bulletin of Mathematical Biology

    6 publications · 538 citations

    6

    h-index

  3. Journal of Computational Biology

    4 publications · 83 citations

    4

    h-index

  4. 3

    h-index

  5. Genome Research

    GR · 3 publications · 9.8K citations

    3

    h-index

1–5