Journal of Agricultural and Food Chemistry · 2010 · 27 citations · 58 references
Natural SciencesBiochemistryChemistryComputational ChemistryMolecular BiophysicsMolecular RecognitionBinding ThermodynamicsLigand BindingPhotosynthetic PigmentsProtein DimerizationStructural Basis Of RecognitionAnthocyanin ChemistryBinding ConstantsDimerization AffinityMolecular Dynamics Free Energy CalculationsPigment CopigmentationQuantum Mechanics ModelingStructural Basis Of DimerizationTannin Copigmentation
The binding constants (K) for the interaction of three copigments (CP), two epimeric vinylcatechin dimers (CP1 and CP2), and catechin dimer B3 (CP3) with two pigments, malvidin-3-glucoside (oenin) and malvidin-3,5-diglucoside (malvin), were determined. The K values clearly show that both vinylcatechin dimers have much higher affinity for oenin and malvin than dimer B3: K(CP2) > K(CP1) >> K(CP3). Quantum mechanics and molecular dynamics calculations were also performed to interpret the binding data and specify the relative arrangement of the pigment and copigment molecules within the complexes.
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The Amber biomolecular simulation programs
David A. Case, Thomas E. Cheatham, Tom Darden et al. · Journal of Computational Chemistry · 2005 · 9.6K citations · Full text