ACS Infectious Diseases · 2022 · 24 citations · 39 references
PharmacyMedicinal ChemistryPharmacologyDrug DesignDrug DiscoveryLead OptimizationChemical Probe DiscoveryEnzyme TargetsEnzyme-substrate RecognitionAntimalarial AgentsAntimalarial Drug DevelopmentChemical Target ValidationDrug Target ValidationDrug-target EngagementDruggable Target DiscoveryLead Compound OptimizationThermal Proteome Profiling
KRS). The toolkit includes resistant mutants to probe resistance mechanisms and on-target engagement for specific chemotypes; a hybrid KRS protein capable of producing crystals suitable for ligand soaking, thus providing high-resolution structural information to guide compound optimization; chemical probes to facilitate pulldown studies aimed at revealing the full range of specifically interacting proteins and thermal proteome profiling (TPP); as well as streamlined isothermal TPP methods to provide unbiased confirmation of on-target engagement within a biologically relevant milieu. This combination of tools and methodologies acts as a template for the development of future target-enabling packages.
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The Sequence Alignment/Map format and SAMtools
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Fast gapped-read alignment with Bowtie 2
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