Grapevine and Wine Metabolomics-Based Guidelines for FAIR Data and Metadata Management

Stefania Savoi, Panagiotis Arapitsas, Éric Duchêne, Maria Nikolantonaki, Ignacio Ontañón, Silvia Carlin, Florian Schwander, Régis D. Gougeon, A. C. Silva Ferreira, Georgios Theodoridis,

Metabolites · 2021 · 22 citations · 40 references

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TL;DR

In the era of big omics data, effective organization, management, and description of experimental data are essential for producing high‑quality datasets, enabling robust results, reliable publications, and data reuse, especially as journals increasingly mandate FAIR principles. This work aims to provide a step‑by‑step guideline for FAIR data and metadata management specific to grapevine and wine science. The guidelines detail recommendations for organizing data and metadata across experimental design, phenotyping, sample collection, preparation, chemotype analysis, data analysis, metabolite annotation, and basic ontologies. The authors anticipate that these guidelines will aid the grapevine and wine metabolomics community in unlocking the full potential of data reuse to generate new knowledge.

Abstract

In the era of big and omics data, good organization, management, and description of experimental data are crucial for achieving high-quality datasets. This, in turn, is essential for the export of robust results, to publish reliable papers, make data more easily available, and unlock the huge potential of data reuse. Lately, more and more journals now require authors to share data and metadata according to the FAIR (Findable, Accessible, Interoperable, Reusable) principles. This work aims to provide a step-by-step guideline for the FAIR data and metadata management specific to grapevine and wine science. In detail, the guidelines include recommendations for the organization of data and metadata regarding (i) meaningful information on experimental design and phenotyping, (ii) sample collection, (iii) sample preparation, (iv) chemotype analysis, (v) data analysis (vi) metabolite annotation, and (vii) basic ontologies. We hope that these guidelines will be helpful for the grapevine and wine metabolomics community and that it will benefit from the true potential of data usage in creating new knowledge being revealed.

References

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