Science Advances · 2020 · 50 citations · 36 references
Life SciencesBiochemistryMolecular BiologyGene ExpressionGene RegulationProtein TranslationRibosome ProfilingRna-binding ProteinsTranslation ControlTranslation RegulationTranslational ControlTranslational RegulationCap Binding ProteinsEukaryotic Initiation Factor 4ERna Translation ControlRna-binding Protein Regulation Of TranslationRna-binding Proteins In TranslationTranslation Initiation EfficiencyTranslation PathwaysTranslational Activation
and mammals under conditions known to activate 4E-BP. The protein associates with specific mRNAs, and ribosome profiling data show that mTOR inhibition changes the translational efficiency of 4E-BP TRIBE targets more substantially compared to nontargets. In both systems, these targets have specific motifs and are enriched in translation-related pathways, which correlate well with the known activity of 4E-BP and suggest that it modulates the binding specificity of eIF4E and contributes to mTOR translational specificity.
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MEME SUITE: tools for motif discovery and searching
Timothy L. Bailey, Mikael Bodén, Fabian A. Buske et al. · Nucleic Acids Research · 2009 · 11.5K citations · Full text
RSeQC: quality control of RNA-seq experiments
Liguo Wang, Shengqin Wang, Wei Li · Bioinformatics · 2012 · 3K citations · Full text