TRIBE: Hijacking an RNA-Editing Enzyme to Identify Cell-Specific Targets of RNA-Binding Proteins

Aoife McMahon, Reazur Rahman, Hua Jin, +4

Cell

Rna ProcessingFunctional GenomicsNatural SciencesRna Binding ProteinsRna Structure Prediction +10

RNA-seq analysis of Drosophila clock and non-clock neurons reveals neuron-specific cycling and novel candidate neuropeptides

Katharine C. Abruzzi, Zadina Abigail, Weifei Luo, +5

PLoS Genetics

GeneticsCryptochromeCellular NeurobiologySocial SciencesDrosophila Clock +17

Unique transposon landscapes are pervasive across<i>Drosophila melanogaster</i>genomes

Reazur Rahman, Gung‐Wei Chirn, Abhay Kanodia, +4

Nucleic Acids Research

Comparative GenomicsGeneticsGenomicsMolecular EcologyUnique Transposon Landscapes +14

Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals

Gung‐Wei Chirn, Reazur Rahman, Yuliya A. Sytnikova, +8

PLoS Genetics

Eutherian MammalsGeneticsGenomic MechanismMolecular GeneticsGenomics +15

Identification of RNA-binding protein targets with HyperTRIBE

Reazur Rahman, Weijin Xu, Hua Jin, +1

Nature Protocols

Rna-binding Protein TargetsNatural SciencesRna Binding ProteinsRna Structure PredictionRna Biology +3

Genome-wide identification of neuronal activity-regulated genes in Drosophila

Xiao Chen, Reazur Rahman, Fang Guo, +1

eLife

Mechanistic implications of enhanced editing by a HyperTRIBE RNA-binding protein

Weijin Xu, Reazur Rahman, Michael Rosbash

RNA

Rna ProcessingRna TargetsEngineeringGeneticsRna Biology +12

Transposable element dynamics and PIWI regulation impacts lncRNA and gene expression diversity in <i>Drosophila</i> ovarian cell cultures

Yuliya A. Sytnikova, Reazur Rahman, Gung‐Wei Chirn, +2

Genome Research

GeneticsGenomic MechanismMolecular GeneticsGene Regulatory NetworkReproductive Biology +17

TRIBE editing reveals specific mRNA targets of eIF4E-BP in <i>Drosophila</i> and in mammals

Hua Jin, Weijin Xu, Reazur Rahman, +6

Science Advances

TDP-43 dysfunction restricts dendritic complexity by inhibiting CREB activation and altering gene expression

Josiah J. Herzog, Weijin Xu, Mugdha Deshpande, +5

Proceedings of the National Academy of Sciences

Molecular RegulationImmunologyCell DeathMolecular BiologyDendritic Complexity +19