RSeQC: quality control of RNA-seq experiments

Liguo Wang, Shengqin Wang, Wei Li

Bioinformatics

CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model

Liguo Wang, Hyun Jung Park, Surendra Dasari, +3

Nucleic Acids Research

EngineeringGeneticsMolecular BiologyCoding-potential Assessment ToolTranscriptomics Technology +26

CrossMap: a versatile tool for coordinate conversion between genome assemblies

Hao Zhao, Zhifu Sun, Jing Wang, +3

Bioinformatics

Intrinsic BET inhibitor resistance in SPOP-mutated prostate cancer is mediated by BET protein stabilization and AKT–mTORC1 activation

Pingzhao Zhang, Dejie Wang, Yu Zhao, +23

Nature Medicine

Bet Protein StabilizationMedicineCancer Cell BiologySpop-mutated Prostate CancerCell Biology +7

Integrated watershed management: evolution, development and emerging trends

Guangyu Wang, Shari L. Mang, Haisheng Cai, +4

Journal of Forestry Research

Sustainable Environmental ManagementRiver Basin ManagementEngineeringWater ResourcesWatershed Management +13

Measure transcript integrity using RNA-seq data

Liguo Wang, Jinfu Nie, Hugues Sicotte, +11

BMC Bioinformatics

Phosphorylated RB Promotes Cancer Immunity by Inhibiting NF-κB Activation and PD-L1 Expression

Xin Jin, Donglin Ding, Yuqian Yan, +16

Molecular Cell

Cancer ImmunosurveillanceSignal TransductionCell RegulationPd-l1 ExpressionMedicine +10

Crystal structures of the extracellular domain of LRP6 and its complex with DKK1

Zhihong Cheng, Travis L. Biechele, Zhiyi Wei, +4

Nature Structural & Molecular Biology

Protein FunctionBiochemistryExtracellular DomainNatural SciencesProtein X-ray Crystallography +4

Whole-genome and Transcriptome Sequencing of Prostate Cancer Identify New Genetic Alterations Driving Disease Progression

Shancheng Ren, Gong‐Hong Wei, Dongbing Liu, +59

European Urology

BioinformaticsUrologySomatic VariantTumor HeterogeneityMedicine +7

Recurrent chimeric RNAs enriched in human prostate cancer identified by deep sequencing

K. P. Kannan, Liguo Wang, Jianghua Wang, +3

Proceedings of the National Academy of Sciences

EngineeringGeneticsTranscriptomics TechnologyHuman Prostate CancerTranscriptional Regulation +20