Concepedia

Transcriptome analysis of acerola fruit ripening: insights into ascorbate, ethylene, respiration, and softening metabolisms

Clesivan Pereira dos Santos, Mathias Coelho Batista, Kátia Daniella da Cruz Saraiva, André Luiz Maia Roque, Rafael de Souza Miranda, Lorena Silva, Carlos Farley Herbster Moura, Elenilson G. Alves Filho, Kirley Marques Canuto

Plant Molecular Biology · 2019 · 43 citations · 149 references

DOI

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References

149

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love, Wolfgang Huber, Simon Anders · Genome biology · 2014 · 100.5K citations · Full text

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Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text

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<tt>edgeR</tt> : a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson, Davis J. McCarthy, Gordon K. Smyth · Bioinformatics · 2009 · 44.5K citations · Full text

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KEGG: Kyoto Encyclopedia of Genes and Genomes

Hiroyuki Ogata, Susumu Goto, Kazushige Sato et al. · Nucleic Acids Research · 1999 · 32.4K citations · Full text

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RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

Bo Li, Colin N. Dewey · BMC Bioinformatics · 2011 · 23.4K citations · Full text

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