<tt>edgeR</tt> : a Bioconductor package for differential expression analysis of digital gene expression data - Concepedia

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<tt>edgeR</tt> : a Bioconductor package for differential expression analysis of digital gene expression data

DOI Full Paper Access

42.7K

Citations

9

References

2009

Year

Mark D. Robinson, Davis J. McCarthy, Gordon K. Smyth

Abstract

The package is freely available under the LGPL licence from the Bioconductor web site (http://bioconductor.org).

References

	Year	Citations
Bioconductor: open software development for computational biology and bioinformatics Robert Gentleman, Vincent J. Carey, Douglas M. Bates, Genome biology	2004	12.4K
Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments Gordon K. Smyth Statistical Applications in Genetics and Molecular Biology Transcriptomics TechnologyEmpirical Bayes MethodsLinear ModelsGene Expression ProfilingComputational Genomics	2004	11.9K
RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays John C. Marioni, Christopher E. Mason, Shrikant Mane, Genome Research GeneticsMolecular BiologyTranscriptomics TechnologyIllumina SequencingGenomics	2008	2.8K
Small-sample estimation of negative binomial dispersion, with applications to SAGE data Mark D. Robinson, Gordon K. Smyth Biostatistics Dispersion EstimationDispersion ParameterGeneticsEstimation StatisticStatistical Genetics	2007	1.1K
Comparative Analysis of Human Gut Microbiota by Barcoded Pyrosequencing Anders F. Andersson, Mathilda Lindberg, Hedvig E. Jakobsson, PLoS ONE Microbial DiversityMicrobiota StructureProbioticDysbiosisMicrobial Systematics	2008	1K
Moderated statistical tests for assessing differences in tag abundance Mark D. Robinson, Gordon K. Smyth Bioinformatics Abstract MotivationEngineeringGeneticsGlobal DistributionGenomics	2007	909
A Conditional Likelihood Approach to Residual Maximum Likelihood Estimation in Generalized Linear Models Gordon K. Smyth, A. P. Verbyla Journal of the Royal Statistical Society Series B (Statistical Methodology) Parameter EstimationConditional LikelihoodGeneralized Linear ModelsLikelihood EstimationEngineering	1996	141
Determination of tag density required for digital transcriptome analysis: Application to an androgen-sensitive prostate cancer model Hairi Li, Michael Lovci, Young‐Soo Kwon, Proceedings of the National Academy of Sciences	2008	97
The National Health and Medical Research Council R. W. Stanford Australasian Radiology Health PolicyPublic HealthPublic Health PolicyNon-communicable DiseaseHealth Informatics	1971	79

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