Microbiology Resource Announcements · 2018 · 33 citations · 10 references
Life SciencesPlant BiologyPlant SciencesGenome AssemblyGenomicsPlant GenomicsDe Novo Genome AssemblyFungal GeneticsFungal GenomicsPathogen GenomicsPlant-pathogen InteractionsPlant-pathogenic FungiPathogen Genome AnnotationPathogen Genome AssemblyPathogen Genome SequencingPathogenicity GenomicsReference Genome AnalysisReference Genome ConstructionReference Genome CurationReference Strain Management
Fusarium oxysporum is a pathogenic fungus that infects hundreds of plant species. This paper reports the improved genome assembly of a reference strain, F. oxysporum f. sp. lycopersici Fol4287, a tomato pathogen.
10
Fast and accurate short read alignment with Burrows–Wheeler transform
Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
Chen-Shan Chin, David H. Alexander, Patrick Marks et al. · Nature Methods · 2013 · 4.3K citations
Haplotype-based variant detection from short-read sequencing
Erik Garrison, Gábor Marth · arXiv (Cornell University) · 2012 · 4.1K citations · Full text
Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium
Li‐Jun Ma, H. Charlotte van der Does, Katherine A. Borkovich et al. · Nature · 2010 · 1.8K citations · Full text