Nature Methods · 2013 · 4.3K citations · 34 references
Life SciencesBioinformaticsMicrobiologyGenome AssemblyGenomicsMicrobial GenomicsComparative Microbial GenomicsDe Novo Genome AssemblyDna SequencingGenome SequencingLong-read AssemblyMetagenome AssemblyGenome Assembly In MicrobesHybrid Metagenomic AssemblyLong-read Metagenome AssemblyLong-read SequencingMicrobial Genome Annotation
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MUSCLE: multiple sequence alignment with high accuracy and high throughput
R. C. Edgar · Nucleic Acids Research · 2004 · 46.5K citations · Full text
The Complete Genome Sequence of <i>Escherichia coli</i> K-12
Frederick R. Blattner, Guy Plunkett, Craig A. Bloch et al. · Science · 1997 · 7.5K citations
Base-Calling of Automated Sequencer Traces Using<i>Phred.</i> I. Accuracy Assessment
Brent Ewing, LaDeana Hillier, Michael C. Wendl et al. · Genome Research · 1998 · 7K citations · Full text
Versatile and open software for comparing large genomes
Stefan Kurtz, Adam M. Phillippy, Arthur L. Delcher et al. · Genome biology · 2004 · 5.8K citations · Full text
Real-Time DNA Sequencing from Single Polymerase Molecules
John Eid, Adrian Fehr, Jeremy Gray et al. · Science · 2008 · 3.8K citations