Concepedia

Reference Genome Analysis

Reference Genome Analysis is a sequence-based epidemiological method that involves the comparative alignment and characterization of pathogen genome sequences against a standardized reference genome to identify genetic variations, infer evolutionary relationships, and support outbreak tracking and surveillance.

500

Publications

60.3K

Citations

4.4K

Authors

1.3K

Institutions

Publications per year

2017–2026

315

Parents

Publications

500

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

Donovan H. Parks, Michael Imelfort, Connor T. Skennerton et al. · Genome Research · 2015 · 12.8K citations · Full text

, , +17

Aligning sequence reads, clone sequences and assembly con*gs with BWA-MEM

Heng Li · arXiv (Cornell University) · 2014 · 5.8K citations · Full text

, , +17

Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM

Heng Li · DROPS (Schloss Dagstuhl – Leibniz Center for Informatics) · 2013 · 5.3K citations · Full text

, , +17

Genome analysis in Brassica with special reference to the experimental formation of B. napus and peculiar mode of fertilization.

Nu · 1935 · 1.4K citations

, , +8

Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica

Julian Parkhill, Mohammed Sebaihia, Andrew Preston et al. · Nature Genetics · 2003 · 1K citations

, , +15

1–5 of 500

Authors

4.4K

  1. OD
    Olga Dudchenko

    Baylor College of Medicine, United States

    7 publications · 313 citations

    7

    h-index

  2. EL
    Erez Lieberman Aiden

    Baylor College of Medicine, United States

    7 publications · 313 citations

    7

    h-index

  3. TP
    Timothy P. L. Smith

    Roman L. Hruska U.S. Meat Animal Research Center, United States

    7 publications · 1.5K citations

    7

    h-index

  4. MP
    Michael P. Heaton

    Roman L. Hruska U.S. Meat Animal Research Center, United States

    6 publications · 322 citations

    6

    h-index

  5. BD
    Benjamin D. Rosen

    Agricultural Research Service, United States

    6 publications · 1.5K citations

    6

    h-index

1–5 of 4.4K

Institutions

1.3K

  1. Centre National de la Recherche Scientifique

    Paris, France

    21 h-index

    77 publications

    8.4K citations

  2. Wellcome Sanger Institute

    Cambridge, United Kingdom

    18 h-index

    128 publications

    56.9K citations

  3. Chinese Academy of Sciences

    Beijing, China

    18 h-index

    93 publications

    6.6K citations

  4. Agricultural Research Service

    Washington, United States

    15 h-index

    35 publications

    10K citations

  5. Centers for Disease Control and Prevention

    Atlanta, United States

    14 h-index

    65 publications

    6K citations

  6. Chinese Academy of Agricultural Sciences

    Beijing, China

    12 h-index

    85 publications

    9K citations

  7. Broad Institute

    Cambridge, United States

    12 h-index

    20 publications

    1.3K citations

  8. Howard Hughes Medical Institute

    Chevy Chase, United States

    12 h-index

    18 publications

    3.4K citations

1–8 of 1.3K

Venues

  1. BMC Genomics

    30 publications · 1.6K citations

    22

    h-index

  2. Genome Announcements

    GenomeA · 28 publications · 784 citations

    20

    h-index

  3. PLoS ONE

    24 publications · 1.8K citations

    19

    h-index

  4. Journal of Bacteriology

    JB · 19 publications · 839 citations

    16

    h-index

  5. Molecular Ecology Resources

    16 publications · 759 citations

    15

    h-index

1–5