The origin and adaptive evolution of domesticated populations of yeast from Far East Asia

References

Page 1

	Year	Citations
Basic local alignment search tool Stephen F. Altschul, Warren Gish, Webb Miller, Journal of Molecular Biology BioinformaticsEngineeringInformation RetrievalString-searching AlgorithmString Processing	1990	92.8K
Fast gapped-read alignment with Bowtie 2 Ben Langmead, Steven L. Salzberg Nature Methods Long-read SequencingSequence AssemblyNatural SciencesComputational BiologyMolecular Biology	2012	58.3K
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability Kazutaka Katoh, Daron M. Standley Molecular Biology and Evolution GeneticsMolecular BiologyMajor UpdateGenomicsSequence Alignment	2013	45.6K
PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses Shaun Purcell, Benjamin M. Neale, Katherine EO Todd-Brown, The American Journal of Human Genetics Genome-wide Association StudyWhole-genome AssociationLinkage DisequilibriumGenotype-phenotype AssociationPopulation-based Linkage Analyses	2007	34.9K
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies Alexandros Stamatakis Bioinformatics Abstract MotivationGeneticsGenomicsPhylogenetic AnalysisPhylogenetics	2014	33.3K
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data Aaron McKenna, Matthew G. Hanna, Eric Banks, Genome Research	2010	28.9K
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff Pablo Cingolani, Adrian E. Platts, Le Lily Wang, Fly GeneticsGenetic EpidemiologyHuman PolymorphismGenomicsSnp Frequency	2012	12.1K
Fast model-based estimation of ancestry in unrelated individuals David H. Alexander, John Novembre, Kenneth Lange Genome Research	2009	10K
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement Bruce J. Walker, Thomas Abeel, Terrance Shea, PLoS ONE EngineeringGeneticsDiploid GenomesContiguous GenomesMolecular Biology	2014	9.7K
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs Daniel R. Zerbino, Ewan Birney Genome Research	2008	9.6K

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