Concepedia

Microbial Phylogenomics

Microbial Phylogenomics is the systematic inference and analysis of evolutionary relationships among microorganisms through the comparative analysis of whole-genome sequences.

6.6K

Publications

691.5K

Citations

30.5K

Authors

5.5K

Institutions

Publications per year

2017–2026

2.8K

Parents

Children

Publications

6.6K

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

Paul J. McMurdie, Susan Holmes · PLoS ONE · 2013 · 22.5K citations · Full text

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Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

Patrick D. Schloss, Sarah L. Westcott, Thomas Ryabin et al. · Applied and Environmental Microbiology · 2009 · 21.8K citations · Full text

, , +17

UPARSE: highly accurate OTU sequences from microbial amplicon reads

R. C. Edgar · Nature Methods · 2013 · 17.3K citations

, , +14

UCHIME improves sensitivity and speed of chimera detection

R. C. Edgar, Brian J. Haas, José C. Clemente et al. · Bioinformatics · 2011 · 15.5K citations · Full text

, , +17

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

Morgan G. I. Langille, Jesse Zaneveld, J. Gregory Caporaso et al. · Nature Biotechnology · 2013 · 9.4K citations · Full text

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1–5 of 6.6K

Authors

30.5K

  1. TW
    Tanja Woyke

    Joint Genome Institute, United States

    91 publications · 10.1K citations

    43

    h-index

  2. JP
    Julian Parkhill

    Wellcome Sanger Institute, United Kingdom

    49 publications · 13.7K citations

    40

    h-index

  3. NC
    Nikos C. Kyrpides

    Joint Genome Institute, United States

    69 publications · 10.9K citations

    37

    h-index

  4. PH
    Philip Hugenholtz

    The University of Queensland, Australia

    53 publications · 21.9K citations

    36

    h-index

  5. NI
    Natalia Ivanova

    Joint Genome Institute, United States

    60 publications · 9.2K citations

    33

    h-index

1–5 of 30.5K

Institutions

5.5K

  1. Joint Genome Institute

    Berkeley, United States

    72 h-index

    1.4K publications

    209.6K citations

  2. Centre National de la Recherche Scientifique

    Paris, France

    69 h-index

    848 publications

    85.1K citations

  3. Wellcome Sanger Institute

    Cambridge, United Kingdom

    60 h-index

    484 publications

    215.7K citations

  4. Chinese Academy of Sciences

    Beijing, China

    55 h-index

    737 publications

    47.1K citations

  5. Harvard University

    Cambridge, United States

    53 h-index

    176 publications

    87K citations

  6. Lawrence Berkeley National Laboratory

    Berkeley, United States

    50 h-index

    390 publications

    63.2K citations

  7. University of California, Berkeley

    Berkeley, United States

    49 h-index

    256 publications

    75.4K citations

  8. Institut Pasteur

    Paris, France

    49 h-index

    284 publications

    32.4K citations

1–8 of 5.5K

Venues

  1. Applied and Environmental Microbiology

    AEM · 250 publications · 55.4K citations

    94

    h-index

  2. The ISME Journal

    158 publications · 24.7K citations

    85

    h-index

  3. PLoS ONE

    207 publications · 42.3K citations

    77

    h-index

  4. Frontiers in Microbiology

    301 publications · 17K citations

    71

    h-index

  5. Environmental Microbiology

    113 publications · 12.2K citations

    63

    h-index

1–5