Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

References

Page 1

	Year	Citations
Search and clustering orders of magnitude faster than BLAST R. C. Edgar Bioinformatics	2010	21.1K
APE: Analyses of Phylogenetics and Evolution in R language Emmanuel Paradis, Julien Claude, Korbinian Strimmer Bioinformatics	2004	12.3K
Structure, function and diversity of the healthy human microbiome Curtis Huttenhower, Lucia Alvarado, Sandra L. Lee Nature Microbiota StructureDysbiosisHealthy Human MicrobiomeMicrobiotaGut Microbiology	2012	11.6K
Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB Todd Z. DeSantis, Philip Hugenholtz, N. Larsen, Applied and Environmental Microbiology	2006	11K
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea Daniel McDonald, Morgan N. Price, Julia K. Goodrich, The ISME Journal	2011	5.2K
KEGG for integration and interpretation of large-scale molecular data sets Minoru Kanehisa, Susumu Goto, Yoko Sato, Nucleic Acids Research EngineeringGeneticsGenomicsBioinformatics DatabaseData Science	2011	4.9K
The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes Folker Meyer, Daniel Paarmann, M. D'Souza, BMC Bioinformatics	2008	3.6K
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons Brian J. Haas, Dirk Gevers, Ashlee M. Earl, Genome Research Molecular BiologyNucleic Acid Amplification TestGenomicsHigh Throughput SequencingAmplification Products	2011	3.5K
Bacterial Community Variation in Human Body Habitats Across Space and Time Elizabeth K. Costello, Christian L. Lauber, Micah Hamady, Science	2009	3.2K
Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment Xochitl C. Morgan, Timothy L. Tickle, Harry Sokol, Genome biology	2012	2.7K

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