Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

Patrick D. Schloss, Sarah L. Westcott, Thomas Ryabin, +12

Applied and Environmental Microbiology

Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy

Qiong Wang, George M Garrity, James M. Tiedje, +1

Applied and Environmental Microbiology

Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA

Gerard Muyzer, Ellen C. de Waal, André G. Uitterlinden

Applied and Environmental Microbiology

BiologyMicrobial DiversityMolecular EcologyNatural SciencesMolecular Biology +9

Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB

Todd Z. DeSantis, Philip Hugenholtz, N. Larsen, +7

Applied and Environmental Microbiology

UniFrac: a New Phylogenetic Method for Comparing Microbial Communities

Catherine Lozupone, Rob Knight

Applied and Environmental Microbiology

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

James J. Kozich, Sarah L. Westcott, Nielson T. Baxter, +2

Applied and Environmental Microbiology

GeneticsCuration PipelineGenomicsDual-index Sequencing StrategyMicrobial Evolution +19

Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes

N. Louise Glass, Gavin C. Donaldson

Applied and Environmental Microbiology

Filamentous AscomycetesComparative GenomicsGeneticsOligonucleotide PrimersMolecular Biology +18

Use of nuclepore filters for counting bacteria by fluorescence microscopy

John E. Hobbie, Ralph J. Daley, S. Jasper

Applied and Environmental Microbiology

FiltrationEngineeringMicroscopyBacteriologyFouling +16

Modeling of the Bacterial Growth Curve

M.H. Zwietering, I. Jongenburger, F.M. Rombouts, +1

Applied and Environmental Microbiology

Sigmoidal FunctionsAntimicrobial SusceptibilityBacteriologyMicrobial EcologyBacterial Growth Curve +6

Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations

Rudolf Amann, Brian J. Binder, Robert Olson, +3

Applied and Environmental Microbiology

BiologyFlow CytometryMicrobial DiversityRrna-targeted Oligonucleotide ProbesBiomolecular Tool +12