Science · 2018 · 736 citations · 23 references
Life SciencesGeneticsOncologyCancer GeneticsMolecular OncologyNeuro-oncologyBrain TumorsCancer TranscriptomicsOncogenic ProliferationPediatric Brain TumorsSingle-cell Rna Sequencing AnalysisSingle-cell TranscriptomicsCellular ArchitectureCellular Context DependenceGlial Tumor GeneticsOligodendrocyte Precursor Cell BiologyOligodendrocyte Precursor Cell DifferentiationOligodendrocyte Progenitor CellsPediatric Brain Tumor BiologySingle-cell Rna Sequencing
The cellular composition of H3K27M gliomas Diffuse midline gliomas with histone H3 lysine27-to-methionine mutations (H3K27M-glioma) are an aggressive type of childhood cancer with few options for treatment. Filbin et al. used a single-cell sequencing approach to study the oncogenic programs, genetics, and cellular hierarchies of H3K27M-glioma. Tumors were mainly composed of cells resembling oligodendrocyte precursor cells, whereas differentiated malignant cells were a smaller fraction. In comparison with other gliomas, these cancers had distinct oncogenic programs and stem cell–like profiles that contributed to their stable tumor-propagating potential. The analysis also identified a lineage-specific marker that may be useful in developing therapies. Science , this issue p. 331
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Fast and accurate short read alignment with Burrows–Wheeler transform
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<tt>BLAT</tt>—The <tt>BLAST</tt>-Like Alignment Tool
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Full-length RNA-seq from single cells using Smart-seq2
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